CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0644100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os02g0644100 AK102431.1 - Heat shock protein STI (Stress inducible protein)(GmSTI) 6e-33 At1g62740 stress-inducible protein, putative S.X. H.G.
0.67 87.2 Os01g0180800 AK059244.1 - Heat shock protein Hsp70 family protein 1e-25 At1g79930 HSP91 S.X. H.G.
0.67 87.2 Os08g0464000 AK059195.1 - Protein of unknown function DUF704 domaincontaining protein 1e-5 At3g12050 Aha1 domain-containing protein S.X. H.G.
0.60 79.7 Os08g0525600 CB620654 - Rof1 6e-24 At3g25230 ROF1 (ROTAMASE FKBP 1) S.X. H.G.
0.02 1.0 Os03g0158200 CR290189 - DEAD/DEAH box helicase, N-terminal domaincontaining protein 2e-10 At3g53110 LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) S.X. H.G.
0.01 0.5 Os03g0390400 AB025187.1 - Cytochrome c oxidase subunit 6b (OSJNBa0029H02.1protein) (OSJNBa0067K08.22 protein) 7e-37 At1g22450 COX6B (CYTOCHROME C OXIDASE 6B) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.9 96.5 GSM275408 Bala root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.8 96.5 GSM99879 TCHW P21_ir29 control, biological rep3 GSE4438 Expression data from rice under salinity stress
4.7 96.4 GSM99877 TCHW P19_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
4.4 96.2 GSM275410 Bala root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.2 96.0 GSM409421 Nipponbare_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
4.1 96.0 GSM429983 Rice mutant phoenix (pho) panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
4.1 96.0 GSM275409 Bala root tip_At the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.1 96.0 GSM275407 Azucena root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.1 96.0 GSM275414 Azucena root tip_Before the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.0 95.9 GSM100442 Rice Azucena 1ppm Arsenate Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-9 65 Os05g0569000 9633.m04629 - - 7e-1 At3g30350 unknown protein C.G. S.X.
0.01 9e-3 44 Os01g0183300 AK110423.1 - Endonuclease/exonuclease/phosphatase familyprotein 5e-3 At3g63240 endonuclease/exonuclease/phosphatase family protein C.G. S.X.
0.01 9e-3 44 Os03g0635000 9631.m04188 - - 1e+1 At1g73350 unknown protein C.G. S.X.
0.01 9e-3 44 Os06g0335900 AK120283.1 - Xyloglucan endotransglycosylase XET2 (Fragment) 7e-2 At5g66300 NAC105 (NAC DOMAIN CONTAINING PROTEIN 105) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.26 6e-33 143 Arabidopsis thaliana At1g62740 842572 stress-inducible protein, putative F:binding;P:response to stress;C:cytosol, nucleus, plasma membrane;OBMPFAV - - - C.G. S.X.
0.21 8e-21 103 Glycine max Gma.8435.1.S1_at X79770.1 stress inducible protein - 1e-61 At1g62740 stress-inducible protein, putative C.G. S.X.
0.66 0 924 Hordeum vulgare Contig3357_at Contig3357 - - 1e-15 At1g62740 stress-inducible protein, putative C.G. S.X.
0.23 6e-31 137 Populus trichocarpa PtpAffx.215660.1.S1_s_at pmrna29980 hypothetical protein - 1e-64 At4g12400 stress-inducible protein, putative C.G. S.X.
0.53 0 971 Triticum aestivum Ta.8679.1.S1_x_at CK157404 - - 1e-9 At1g62740 stress-inducible protein, putative C.G. S.X.
0.23 4e-56 218 Vitis vinifera 1618545_a_at CB346750 hypothetical LOC100265979 - 2e-50 At1g12270 stress-inducible protein, putative C.G. S.X.
0.67 0 779 Zea mays Zm.6353.2.A1_at CA404287 - - 8e-11 At1g62740 stress-inducible protein, putative C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage