CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0644000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 82.7 Os02g0644000 AB081464.1 - C13 endopeptidase NP1 (Fragment) 2e-23 At1g62710 BETA-VPE (BETA VACUOLAR PROCESSING ENZYME) S.X. H.G.
0.94 99.4 Os01g0702500 AY333185.1 - Dehydrin RAB25 3e-5 At3g50980 XERO1 (DEHYDRIN XERO 1) S.X. H.G.
0.89 96.9 Os04g0510900 AK063625.1 - Embryo-specific protein 1 (ATS1) 9e+0 At1g23240 caleosin-related family protein S.X. H.G.
0.89 96.9 Os05g0569500 AF049892.1 - - 6e-10 At1g05510 - S.X. H.G.
0.88 96.8 Os03g0277500 AK063650.1 - Glyoxalase/bleomycin resistanceprotein/dioxygenase domain containing protein 2e+1 At4g38260 unknown protein S.X. H.G.
0.88 96.8 Os08g0127900 U25968.1 - Globulin 1 (Fragment) 4e+0 At3g55790 unknown protein S.X. H.G.
0.86 96.4 Os09g0109600 AK063582.1 - Conserved hypothetical protein 1e+0 At3g57500 unknown protein S.X. H.G.
0.79 93.6 Os01g0303300 9629.m01932 - Mitochondrial import inner membrane translocase,subunit Tim17/22 family protein 5e-1 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) S.X. H.G.
0.79 93.6 Os05g0349800 AK063677.1 - Embryonic abundant protein 1 7e-3 At3g51810 EM1 (LATE EMBRYOGENESIS ABUNDANT 1) S.X. H.G.
0.78 93.4 Os03g0197300 AK102651.1 - RmlC-like cupin family protein 7e-2 At5g37200 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
72.9 99.9 GSM159219 Seed (S5, 21 - 29 dap), biological rep 1 GSE6893 Expression data for reproductive development in rice
68.7 99.9 GSM159220 Seed (S5, 21 - 29 dap), biological rep 2 GSE6893 Expression data for reproductive development in rice
66.3 99.9 GSM159221 Seed (S5, 21 - 29 dap), biological rep 3 GSE6893 Expression data for reproductive development in rice
43.6 99.9 GSM159218 Seed (S4, 11 - 20 dap), biological rep 3 GSE6893 Expression data for reproductive development in rice
35.6 99.8 GSM159216 Seed (S4, 11 - 20 dap), biological rep 1 GSE6893 Expression data for reproductive development in rice
26.1 99.5 GSM159217 Seed (S4, 11 - 20 dap), biological rep 2 GSE6893 Expression data for reproductive development in rice
26.0 99.5 GSM195228 Embryo GSE7951 Genome-wide gene expression profiling of rice stigma
10.9 98.1 GSM302914 emb6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
10.0 98.0 GSM302915 emb6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
6.5 97.2 GSM195229 Endosperm GSE7951 Genome-wide gene expression profiling of rice stigma
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.44 8e-80 299 Os04g0537900 AK103573.1 - C13 endopeptidase NP1 (Fragment) 1e-6 At1g62710 BETA-VPE (BETA VACUOLAR PROCESSING ENZYME) C.G. S.X.
0.05 2e-3 46 Os01g0559600 AB025310.1 - Vacuolar processing enzyme, alpha-isozymeprecursor (EC 3.4.22.-) (Alpha-VPE) 3e-16 At4g32940 GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME) C.G. S.X.
0.01 3e-5 52 Os11g0234200 AK105440.1 - Zn-finger-like, PHD finger domain containingprotein 2e-2 At1g29380 - C.G. S.X.
0.01 8e-3 44 Os05g0104200 9633.m00043 - Disease resistance protein 2e+0 At1g28360 ERF12 (ERF DOMAIN PROTEIN 12) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 2e-23 111 Arabidopsis thaliana At1g62710 842569 BETA-VPE (BETA VACUOLAR PROCESSING ENZYME) Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteases that is expressed specifically in seeds and is essential for the proper processing of storage proteins. - - - C.G. S.X.
0.19 3e-23 111 Glycine max Gma.968.1.S1_at D28876.1 cysteine proteinase - 9e-38 At1g62710 BETA-VPE (BETA VACUOLAR PROCESSING ENZYME) C.G. S.X.
0.35 4e-29 129 Hordeum vulgare Contig3372_s_at Contig3372 - - 6e-2 At1g62710 BETA-VPE (BETA VACUOLAR PROCESSING ENZYME) C.G. S.X.
0.17 4e-13 77 Populus trichocarpa PtpAffx.203177.1.S1_x_at pmrna6297 hypothetical protein - 5e-27 At1g62710 BETA-VPE (BETA VACUOLAR PROCESSING ENZYME) C.G. S.X.
0.58 0 912 Triticum aestivum Ta.14496.1.S1_x_at CK203323 - - 2e-8 At4g32940 GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME) C.G. S.X.
0.03 7e-2 38 Vitis vinifera 1621718_at BQ794503 hypothetical protein LOC100244137 - 5e-26 At2g25940 ALPHA-VPE (alpha-vacuolar processing enzyme) C.G. S.X.
0.43 4e-78 291 Zea mays Zm.12714.1.S1_at AY106221.1 vacuolar processing enzyme, beta-isozyme - 3e-7 At1g62710 BETA-VPE (BETA VACUOLAR PROCESSING ENZYME) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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