CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0627100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.37 45.0 Os02g0627100 AK068993.1 - Phenylalanine ammonia-lyase (EC 4.3.1.5) 1e-19 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) S.X. H.G.
0.30 32.7 Os08g0448000 AK120964.1 - 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)(4-coumaroyl-CoA synthase 1) (Clone 4CL14) (Fragment) 1e-6 At3g21240 4CL2 (4-COUMARATE:COA LIGASE 2) S.X. H.G.
0.22 19.4 Os03g0788500 AK072204.1 - Calcium-dependent protein kinase 2 8e-30 At3g10660 CPK2 (CALMODULIN-DOMAIN PROTEIN KINASE CDPK ISOFORM 2) S.X. H.G.
0.19 15.1 Os05g0522600 AK072881.1 - Leucine-rich repeat, plant specific containingprotein 3e-2 At1g48480 RKL1 S.X. H.G.
0.15 10.3 Os09g0571200 AK062604.1 - C2 domain containing protein 8e-3 At1g07310 C2 domain-containing protein S.X. H.G.
0.15 10.3 Os04g0531400 AK105289.1 - Receptor like protein kinase 2e-2 At4g02420 lectin protein kinase, putative S.X. H.G.
0.12 7.2 Os02g0653900 AK104793.1 - - 6e-2 At4g16820 lipase class 3 family protein S.X. H.G.
0.10 5.7 Os06g0225800 AK109730.1 - Shikimate kinase domain containing protein 1e+0 At3g46500 oxidoreductase, 2OG-Fe(II) oxygenase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
20.8 99.2 GSM262020 Nipponbare, 11 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
15.7 98.7 GSM159208 Seed (S1, 0 - 2 dap), biological rep 2 GSE6893 Expression data for reproductive development in rice
10.4 98.1 GSM154829 Root_DMSO-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
10.2 98.0 GSM159207 Seed (S1, 0 - 2 dap), biological rep 1 GSE6893 Expression data for reproductive development in rice
9.9 98.0 GSM159209 Seed (S1, 0 - 2 dap), biological rep 3 GSE6893 Expression data for reproductive development in rice
9.9 98.0 GSM154831 Root_DMSO-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
8.4 97.7 GSM262013 Nipponbare, 2 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
8.3 97.7 GSM159204 Inflorescence (P6, 22 - 30 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
7.9 97.6 GSM159200 Inflorescence (P4, 10 - 15 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
7.9 97.6 GSM154832 Root_DMSO-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.70 0 1772 Os04g0518400 AK067801.1 - Phenylalanine ammonia-lyase 2 (EC 4.3.1.5) 4e-22 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.65 0 1758 Os02g0626400 BI807677 - Phenylalanine ammonia-lyase (EC 4.3.1.5) 1e-19 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.50 0 807 Os02g0626100 AK121303.1 - Phenylalanine ammonia-lyase (EC 4.3.1.5) 4e+0 At2g03430 ankyrin repeat family protein C.G. S.X.
0.50 0 799 Os12g0520200 CB675503 - Phenylalanine ammonia-lyase (EC 4.3.1.5)(Fragment) 2e-5 At3g53260 PAL2 C.G. S.X.
0.48 0 714 Os04g0518100 AK100346.1 - Phenylalanine ammonia-lyase 2e-11 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 1e-19 99 Arabidopsis thaliana At3g10340 820196 PAL4 (Phenylalanine ammonia-lyase 4) F:ammonia-lyase activity, ammonia ligase activity, catalytic activity;P:L-phenylalanine catabolic process, biosynthetic process;C:cytoplasm;BPOFMA - - - C.G. S.X.
0.09 8e-12 73 Glycine max GmaAffx.86773.2.S1_at BG839283 - - 4e-9 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.63 0 1433 Hordeum vulgare Contig1797_x_at Contig1797 - - 1e-19 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.11 8e-15 83 Populus trichocarpa PtpAffx.2272.1.S1_a_at AY372451.1 phenylalanine amonnia lyase - 1e-49 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.58 0 856 Triticum aestivum Ta.28736.1.S1_at AY005474.1 inducible phenylalanine ammonia-lyase - 3e-14 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.14 2e-9 63 Vitis vinifera 1619642_at CF512453 hypothetical protein LOC100241575 - 3e-28 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.51 0 682 Zea mays Zm.15903.3.A1_at AY104679.1 hypothetical protein LOC100273579 - 4e-12 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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