Gene omics information

Query gene ID Os02g0620600
Gene name
Organism Oryza sativa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.7591.9Os02g0620600AK107204.1-Rh-like protein/ammonium transporter familyprotein2e-17At4g13510AMT1S.X.H.G.
0.8094.6Os07g01930009635.m00915-HIPL1 protein precursor3e-1At5g62630HIPL2 (HIPL2 PROTEIN PRECURSOR)S.X.H.G.
0.6281.5Os09g02935009637.m00942-BRASSINOSTEROID INSENSITIVE 1 precursor (EC2.7.1.37) (AtBRI1) (Brassinosteroid LRR receptor kinase)9e-15At3g13380BRL3 (BRI1-LIKE 3)S.X.H.G.
0.6181.2Os08g0245200AK069932.1-4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)(4-coumaroyl-CoA synthase 1)3e-10At3g212404CL2 (4-COUMARATE:COA LIGASE 2)S.X.H.G.
0.6181.2Os09g0447500AK110565.1-Cytochrome P450 family protein6e-2At1g13110CYP71B7S.X.H.G.
0.5877.0Os07g0421300AK121014.1-Glycoside hydrolase, family 31 protein7e-15At3g23640HGL1 (heteroglycan glucosidase 1)S.X.H.G.
0.5676.3Os01g0248900AK111100.1-Expansin EXPA55e-10At2g37640EXP3S.X.H.G.
0.5676.3Os01g0678800AK062840.1-Heavy metal transport/detoxification proteindomain containing protein3e-1At1g20220nucleic acid bindingS.X.H.G.
0.5573.7Os02g08208009630.m05730-Protein of unknown function DUF296 domaincontaining protein3e-2At4g14465DNA-binding protein-relatedS.X.H.G.
0.5471.9Os04g0684300AK105205.1-Hypothetical protein2e+1Atcg00560-S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
47.899.9GSM359915IR63731 root, control, biological replicate 3GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
30.399.7GSM359908IR29 root, control, biological replicate 1GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
28.299.6GSM359904FL478 root, control, biological replicate 3GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
15.098.6GSM359918IR63731 root, salt-treated, biological replicate 3GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
12.498.3GSM359920Pokkali root, control, biological replicate 2GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
11.698.2GSM359916IR63731 root, salt-treated, biological replicate 1GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
11.398.2GSM359912IR29 root, salt-treated, biological replicate 3GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
9.898.0GSM359917IR63731 root, salt-treated, biological replicate 2GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
9.798.0GSM359909IR29 root, control, biological replicate 2GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
9.397.9GSM359913IR63731 root, control, biological replicate 1GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.6501298Os04g0509500AK107601.1-Conserved hypothetical protein3e-19At1g64780ATAMT1C.G.S.X.
0.630852Os02g06205009630.m03934-High affinity ammonium transporter3e-19At1g64780ATAMT1C.G.S.X.
0.560884Os04g0509600AF001505.1--1e-12At1g64780ATAMT1C.G.S.X.
0.169e-55216Os04g03504339632.m02668--1e+1At2g04690cellular repressor of E1A-stimulated genes (CREG) familyC.G.S.X.
0.013e-242Os05g0113300AK106443.1-Conserved hypothetical protein4e-4At3g53720ATCHX20 (CATION/H+ EXCHANGER 20)C.G.S.X.
0.013e-242Os06g01653009634.m00627-Hypothetical protein2e-4At3g01500CA1 (CARBONIC ANHYDRASE 1)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.202e-1791Arabidopsis thalianaAt4g13510826983AMT1Encodes a plasma membrane localized ammonium transporter. Contains a cytosolic trans-activation domain essential for ammonium uptake.---C.G.S.X.
0.032e-552Glycine maxGma.9265.1.S1_atBU551320--6e-6At4g28700AMT1C.G.S.X.
0.322e-145515Hordeum vulgareContig20708_atContig20708--1e-4At4g13510AMT1C.G.S.X.
0.134e-1067Populus trichocarpaPtp.5712.1.S1_atCK113355ammonium transporter-3e-28At1g64780ATAMT1C.G.S.X.
0.6501602Triticum aestivumTa.12823.1.S1_atCA638403Ammonium transporter Amt1;1-2e-20At4g13510AMT1C.G.S.X.
0.032e+130Vitis vinifera1621461_atCB918305hypothetical protein LOC100262678-1e+0At5g3985040S ribosomal protein S9 (RPS9C)C.G.S.X.
0.273e-54212Zea maysZm.11141.1.S1_atAY106810.1hypothetical protein LOC100272903-1e-7At1g64780ATAMT1C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0015696The directed movement of ammonium into, out of, within or between cells. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals.
LGO:0006810The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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