Gene omics information

Query gene ID Os02g0620500
Gene name
Organism Oryza sativa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.8896.8Os02g06205009630.m03934-High affinity ammonium transporter3e-19At1g64780ATAMT1S.X.H.G.
0.6483.4Os01g0704100AK109776.1--2e-5At1g12940ATNRT2.5 (nitrate transporter2.5)S.X.H.G.
0.6079.7Os02g08208009630.m05730-Protein of unknown function DUF296 domaincontaining protein3e-2At4g14465DNA-binding protein-relatedS.X.H.G.
0.5676.3Os10g0193100CA755860-Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein1e+0At2g22800HAT9S.X.H.G.
0.5371.3Os08g0476900AK101432.1-Patatin-like protein 13e+0At4g37060PLP5 (PATATIN-LIKE PROTEIN 5)S.X.H.G.
0.5269.6Os07g01930009635.m00915-HIPL1 protein precursor3e-1At5g62630HIPL2 (HIPL2 PROTEIN PRECURSOR)S.X.H.G.
0.5168.7Os09g0447500AK110565.1-Cytochrome P450 family protein6e-2At1g13110CYP71B7S.X.H.G.
0.5168.7Os01g0678800AK062840.1-Heavy metal transport/detoxification proteindomain containing protein3e-1At1g20220nucleic acid bindingS.X.H.G.
0.5068.0Os11g0151500AK102457.1-Major facilitator superfamily protein2e-1At5g28440unknown proteinS.X.H.G.
0.4964.4Os05g0489900AK070533.1-Calcium/calmodulin-dependent protein kinase2e-5At4g09570CPK4S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
58.499.9GSM195226RootGSE7951Genome-wide gene expression profiling of rice stigma
29.299.7GSM262021Nipponbare, 11 days after infection with S. hermonthica, biological replicate #2GSE10373Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
21.699.2GSM262009IAC165, 11 days after infection with S. hermonthica, biological replicate #2GSE10373Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
19.299.0GSM262019Nipponbare, 11 days after mock-infection, biological replicate #2GSE10373Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
18.999.0GSM262018Nipponbare, 11 days after mock-infection, biological replicate #1GSE10373Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
17.698.9GSM359918IR63731 root, salt-treated, biological replicate 3GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
16.598.8GSM359922Pokkali root, salt-treated, biological replicate 1GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
16.298.8GSM262020Nipponbare, 11 days after infection with S. hermonthica, biological replicate #1GSE10373Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
14.898.6GSM359906FL478 root, salt-treated, biological replicate 2GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
14.898.6GSM359912IR29 root, salt-treated, biological replicate 3GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.630852Os02g0620600AK107204.1-Rh-like protein/ammonium transporter familyprotein2e-17At4g13510AMT1C.G.S.X.
0.550745Os04g0509600AF001505.1--1e-12At1g64780ATAMT1C.G.S.X.
0.480837Os04g0509500AK107601.1-Conserved hypothetical protein3e-19At1g64780ATAMT1C.G.S.X.
0.023e-242Os02g02672009630.m01561-Alpha-expansin OsEXPA132e-6At1g20190ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)C.G.S.X.
0.013e-242Os06g01653009634.m00627-Hypothetical protein2e-4At3g01500CA1 (CARBONIC ANHYDRASE 1)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.183e-1997Arabidopsis thalianaAt1g64780842786ATAMT1encodes an ammonium transporter protein believed to act as a high affinity transporter. It is expressed in the root, primarily in endodermal and cortical cells, and contributes to ammonium uptake in the root.---C.G.S.X.
0.032e-552Glycine maxPsAffx.C15000112_atPsAffx.C15000112--3e+0At4g09650ATPD (ATP SYNTHASE DELTA-SUBUNIT GENE)C.G.S.X.
0.322e-39163Hordeum vulgareContig11711_atContig11711--1e-4At4g13510AMT1C.G.S.X.
0.106e-24113Populus trichocarpaPtpAffx.208227.1.S1_atpmrna16371ammonium transporter-2e-20At1g64780ATAMT1C.G.S.X.
0.552e-149529Triticum aestivumTa.12823.1.S1_atCA638403Ammonium transporter Amt1;1-2e-20At4g13510AMT1C.G.S.X.
0.053e-1375Vitis vinifera1610744_atCF415597hypothetical protein LOC100258016-1e+0At2g47170ARF1A1CC.G.S.X.
0.191e-40167Zea maysZm.11141.1.S1_atAY106810.1hypothetical protein LOC100272903-1e-7At1g64780ATAMT1C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006810The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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