CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0617100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.96 99.7 Os02g0617100 AK062664.1 - Conserved hypothetical protein 5e-1 At5g37770 TCH2 (TOUCH 2) S.X. H.G.
0.47 62.3 Os05g0207700 AK102665.1 - Serine/threonine-protein kinase PBS1 (EC 2.7.1.37)(AvrPphB susceptible protein 1) 3e-19 At3g58690 protein kinase family protein S.X. H.G.
0.39 48.3 Os02g0149700 AK103492.1 - Exo70 exocyst complex subunit family protein 7e-2 At4g31540 ATEXO70G1 (exocyst subunit EXO70 family protein G1) S.X. H.G.
0.39 48.3 Os02g0226600 AK109849.1 - POX domain containing protein 3e-4 At1g75430 BLH11 (BEL1-LIKE HOMEODOMAIN 11) S.X. H.G.
0.38 46.9 Os05g0497100 AK064293.1 - Chromosome condensation protein 7e-62 At5g48600 ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3) S.X. H.G.
0.38 46.9 Os09g0533200 9637.m03053 - Beta-1,3-glucanase precursor (EC 3.2.1.39) 7e+0 At5g35603 unknown protein S.X. H.G.
0.38 46.9 Os03g0114000 AK063381.1 - Kinesin-related protein (Fragment) 7e-48 At2g22610 kinesin motor protein-related S.X. H.G.
0.37 45.0 Os05g0459400 AK073413.1 - Kinesin, motor region domain containing protein 4e+0 At5g37415 sequence-specific DNA binding / transcription factor S.X. H.G.
0.37 45.0 Os05g0409400 AK102597.1 - MAP65/ASE1 family protein 7e-5 At2g38720 MAP65-5 (MICROTUBULE-ASSOCIATED PROTEIN 65-5) S.X. H.G.
0.36 44.0 Os07g0659500 BX898151 - Non-SMC condensin subunit, XCAP-D2/Cnd1 familyprotein 7e-25 At3g57060 binding S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
29.5 99.7 GSM409428 Nipponbare_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
28.3 99.6 GSM409422 Nipponbare_young panicle 2cm, biological rep2 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
25.2 99.5 GSM409429 Nipponbare_young panicle 2cm, biological rep5 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
22.4 99.3 GSM409421 Nipponbare_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
19.6 99.1 GSM99881 TCHW P23_ir29 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
17.2 98.8 GSM159186 SAM, biological rep 1 GSE6893 Expression data for reproductive development in rice
14.9 98.6 GSM99879 TCHW P21_ir29 control, biological rep3 GSE4438 Expression data from rice under salinity stress
14.2 98.5 GSM99882 TCHW P24_ir29 salt stress, biological rep3 GSE4438 Expression data from rice under salinity stress
13.9 98.5 GSM159187 SAM, biological rep 2 GSE6893 Expression data for reproductive development in rice
12.9 98.4 GSM159188 SAM, biological rep 3 GSE6893 Expression data for reproductive development in rice
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.68 0 3697 Os05g0460200 AK098861.1 - Ubiquitin carrier protein 4e-36 At5g59300 UBC7 (UBIQUITIN CARRIER PROTEIN 7) C.G. S.X.
0.09 4e-12 75 Os04g0506900 AK070863.1 - Conserved hypothetical protein 2e+0 At5g43880 unknown protein C.G. S.X.
0.02 5e-5 52 Os03g0143700 AK066360.1 - Hypothetical protein 2e+0 At5g61110 protein binding / zinc ion binding C.G. S.X.
0.01 7e-2 40 Os12g0102700 AK119290.1 - Hypothetical protein 4e-1 At3g61010 glycosyl hydrolase family protein 85 C.G. S.X.
0.01 1e+0 36 Os01g0171200 AK109475.1 - Hypothetical protein 2e+0 At4g17150 unknown protein C.G. S.X.
0.01 1e+0 36 Os05g0394900 AK058958.1 - Conserved hypothetical protein 2e-1 At1g26210 unknown protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-1 36 Arabidopsis thaliana At5g37770 833755 TCH2 (TOUCH 2) Encodes a protein with 40% similarity to calmodulin. Binds Ca(2+) and, as a consequence, undergoes conformational changes. CML24 expression occurs in all major organs, and transcript levels are increased from 2- to 15-fold in plants subjected to touch, darkness, heat, cold, hydrogen peroxide, abscisic acid (ABA), and indole-3-acetic acid. However, CML24 protein accumulation changes were not detectable. The putative CML24 regulatory region confers reporter expression at sites of predicted mechanical stress; in regions undergoing growth; in vascular tissues and various floral organs; and in stomata, trichomes, and hydathodes. CML24-underexpressing transgenics are resistant to ABA inhibition of germination and seedling growth, are defective in long-day induction of flowering, and have enhanced tolerance to CoCl(2), molybdic acid, ZnSO(4), and MgCl(2). - - - C.G. S.X.
0.02 3e+0 34 Glycine max HgAffx.3198.1.A1_at CK351267 - - 3e+0 At3g11773 electron carrier/ protein disulfide oxidoreductase C.G. S.X.
0.02 1e+0 34 Hordeum vulgare HA07l21r_s_at HA07l21r - - 2e-1 At2g40420 amino acid transporter family protein C.G. S.X.
0.02 7e-1 36 Populus trichocarpa PtpAffx.223177.1.S1_x_at pmrna41050 hypothetical protein - 3e-1 At4g01410 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein C.G. S.X.
0.03 9e+0 32 Triticum aestivum TaAffx.65243.1.A1_at BJ255252 - - 3e-1 At3g52160 KCS15 (3-KETOACYL-COA SYNTHASE 15) C.G. S.X.
0.03 2e-1 36 Vitis vinifera 1618460_at CD007558 - - 5e+0 At5g26114 unknown protein C.G. S.X.
0.06 6e-2 38 Zea mays Zm.12598.1.S1_at BU037415 - - 1e+0 At2g30933 - C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage