CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0608000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.74 91.4 Os02g0608000 9630.m03801 - - 2e+0 At3g03550 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.75 91.9 Os04g0374400 9632.m02899 - - 7e-1 At5g55570 unknown protein S.X. H.G.
0.61 81.2 Os01g0733350 NM_191550.1 - - 1e-1 At4g29240 leucine-rich repeat family protein / extensin family protein S.X. H.G.
0.58 77.0 Os01g0809000 AK119363.1 - Conserved hypothetical protein 4e-1 At1g12830 unknown protein S.X. H.G.
0.56 76.3 Os03g0577400 9631.m03649 - - 3e-1 At5g01881 unknown protein S.X. H.G.
0.56 76.3 Os10g0558500 9638.m03717 - - 3e-1 At5g07500 PEI1 S.X. H.G.
0.53 71.3 Os07g0250700 9635.m01458 - - 5e+0 At5g06490 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.53 71.3 Os07g0194601 9635.m00928 - - 2e-1 At5g47700 60S acidic ribosomal protein P1 (RPP1C) S.X. H.G.
0.48 63.7 Os01g0324800 NM_183801.1 - - 4e-1 At2g15580 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.46 60.9 Os10g0571700 AK063029.1 - Conserved hypothetical protein 3e-1 At1g02840 SR1 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
38.0 99.8 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
34.9 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
32.9 99.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
32.8 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
30.2 99.7 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
29.0 99.7 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.3 99.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.5 99.5 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.2 99.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.9 99.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-4 48 Os04g0429050 9632.m03363 - - 4e-1 At5g07310 AP2 domain-containing transcription factor, putative C.G. S.X.
0.02 3e-3 44 Os02g0790600 AK064699.1 - Zn-finger, RING domain containing protein 2e-4 At5g57750 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 3e-3 44 Os03g0725800 AK120539.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 6e-2 At1g15840 unknown protein C.G. S.X.
0.02 3e-3 44 Os05g0583600 AK108848.1 - Uncharacterized plant-specific domain containingprotein 6e-1 At2g13463 unknown protein C.G. S.X.
0.02 1e-2 42 Os06g0165300 9634.m00627 - Hypothetical protein 2e-4 At3g01500 CA1 (CARBONIC ANHYDRASE 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 34 Arabidopsis thaliana At3g03550 821237 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB - - - C.G. S.X.
0.03 2e+0 34 Glycine max PsAffx.psZS008xG20f_at PsAffx.psZS008xG20f - - 4e+0 At2g18210 unknown protein C.G. S.X.
0.05 3e-3 42 Hordeum vulgare Contig10417_at Contig10417 - - 2e-16 At4g21860 MSRB2 (methionine sulfoxide reductase B 2) C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.211739.1.S1_at pmrna23005 hypothetical protein - 1e+0 At5g46730 glycine-rich protein C.G. S.X.
0.03 4e-1 36 Triticum aestivum TaAffx.97504.1.S1_at BJ293699 - - 9e-23 At2g20370 MUR3 (MURUS 3) C.G. S.X.
0.02 7e+0 30 Vitis vinifera 1622726_at CF515466 - - 4e+0 At2g45200 GOS12 (GOLGI SNARE 12) C.G. S.X.
0.03 6e-1 34 Zea mays ZmAffx.1014.1.A1_at AI881465 - - 2e-1 At1g59750 ARF1 (AUXIN RESPONSE FACTOR 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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