Gene omics information

Query gene ID	Os02g0605900
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	95.8	Os02g0605900	AK064754.1	-	Chitinase (EC 3.2.1.14) A	5e-1	At3g54420	ATEP3	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.20	16.5	Os04g0395800	AK107750.1	-	ZIM domain containing protein	2e-3	At5g11930	glutaredoxin family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.18	13.7	Os01g0934400	AK058904.1	-	Conserved hypothetical protein	6e-3	At3g05410	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.09	4.9	Os03g0218400	AK069202.1	-	Hexose transporter	9e-23	At5g26340	MSS1	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.07	3.7	Os01g0742400	AK109885.1	-	Protein kinase domain containing protein	1e-1	At3g19700	IKU2 (HAIKU2)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	2.0	Os07g0582400	AF416867.1	-	Sorbitol transporter	2e-5	At2g18480	mannitol transporter, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
33.4	99.8	GSM421670	XOC, 2 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
27.7	99.6	GSM174886	F FR13 4 dpi rep 1 with array type rice from Affymetrix	GSE7256	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
25.9	99.5	GSM174889	H FR13 4 dpi rep 2 with array type rice from Affymetrix	GSE7256	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
17.9	98.9	GSM278846	WuYun3-RSV infected, biological rep3	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
14.9	98.6	GSM278844	WuYun3-RSV infected, biological rep1	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
13.5	98.5	GSM421687	XOO, 2 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
12.2	98.3	GSM278848	WuYun3-non-infected, biological rep2	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
11.3	98.2	GSM154945	Leaf_DMSO-treatment_30min_replicate 1	GSE6719	Cytokinin responsive genes in rice
10.8	98.1	GSM421707	MOCK, 2 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.1	98.0	GSM421709	MOCK, 2 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	2e-33	145	Os04g0494100	AB096140.1	-	Endochitinase A precursor (EC 3.2.1.14) (Seedchitinase A)	1e-1	At2g43590	chitinase, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.22	2e-23	111	Os04g0493400	AB003194.1	-	Endochitinase A precursor (EC 3.2.1.14) (Seedchitinase A)	4e-2	At3g54420	ATEP3	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.07	3e-4	48	Os01g0287600	AK063062.1	-	Chitinase (Class II) (EC 3.2.1.14)	3e-2	At3g54420	ATEP3	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.06	1e-6	56	Os06g0726100	Z29962.1	-	Endochitinase precursor (EC 3.2.1.14)	1e-4	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.05	1e-9	65	Os04g0173800	M24504.1	-	Lectin precursor (Agglutinin)	1e-1	At2g43610	glycoside hydrolase family 19 protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	2e-5	52	Os05g0138200	AK110261.1	-	Chitinase (Class II) (EC 3.2.1.14)	2e-3	At3g54420	ATEP3	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	1e-3	46	Os07g0127700	9635.m00284	-	Pathogenesis-related protein 1	7e-2	At4g33730	pathogenesis-related protein, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	5e-1	36	Arabidopsis thaliana	At3g54420	824608	ATEP3	encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e+0	34	Glycine max	PsAffx.CL471Contig1_at	PsAffx.CL471Contig1	-	-	3e-1	At4g04990	unknown protein	C.G.	S.X.	Please select
0.58	4e-111	400	Hordeum vulgare	Contig14498_at	Contig14498	-	-	9e-3	At2g43590	chitinase, putative	C.G.	S.X.	Please select
0.03	7e-1	36	Populus trichocarpa	Ptp.987.1.S1_at	BU895364	-	-	5e-29	At3g54420	ATEP3	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.19	1e-32	141	Triticum aestivum	Ta.224.1.S1_at	AF112966.1	chitinase IV precursor	-	1e-1	At3g54420	ATEP3	C.G.	S.X.	Please select
0.05	5e-11	67	Vitis vinifera	1617192_at	AY137377.1	class IV chitinase	-	4e-2	At2g43570	chitinase, putative	C.G.	S.X.	Please select
0.58	2e-125	448	Zea mays	Zm.12391.1.S1_at	CF349132	endochitinase PR4	-	1e-1	At3g54420	ATEP3	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
L	GO:0051707	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism.
L	GO:0006032	The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of P-1,4-linked N-acetyl-D-glucosamine residues.
L	GO:0016998	The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall.

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage