CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0603800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os02g0603800 AK120769.1 - Isoprenoid biosynthesis-like protein (Fragment) 6e-86 At5g60600 HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) S.X. H.G.
0.83 95.8 Os01g0830000 AK121100.1 - SufB 7e-5 At4g04770 ATABC1 (ATP BINDING CASSETTE PROTEIN 1) S.X. H.G.
0.67 87.2 Os03g0731900 AK064873.1 - Isopentenyl/dimethylallyl diphosphate synthase(Fragment) 8e-23 At4g34350 HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE) S.X. H.G.
0.33 38.8 Os02g0649700 AK069509.1 - Peptidase M41, FtsH extracellular domaincontaining protein 6e-34 At3g47060 ftsh7 (FtsH protease 7) S.X. H.G.
0.30 32.7 Os03g0583800 AK064786.1 - Mpv17/PMP22 family protein 1e-8 At1g52870 peroxisomal membrane protein-related S.X. H.G.
0.27 27.5 Os01g0711400 AY495085.1 - Victorin binding protein 3e-75 At4g33010 AtGLDP1 (Arabidopsis thaliana glycine decarboxylase P-protein 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.2 97.7 GSM421706 XOO, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
8.0 97.6 GSM174886 F FR13 4 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
6.7 97.3 GSM174889 H FR13 4 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
6.6 97.3 GSM174885 B FR13 3 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
6.1 97.1 GSM421726 MOCK, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
6.1 97.1 GSM174888 C mock 3 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
5.8 97.0 GSM421683 XOC, 96 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
5.7 96.9 GSM421686 XOC, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
5.4 96.8 GSM174887 D FR13 3 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
5.1 96.6 GSM421682 XOC, 24 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 7e-1 38 Os03g0333300 AK063858.1 - Eukaryotic translation initiation factor 2 betasubunit (eIF-2-beta) (P38) 6e-32 At5g20920 EIF2 BETA C.G. S.X.
0.01 7e-1 38 Os03g0565200 AK065884.1 - Haloacid dehalogenase-like hydrolase domaincontaining protein 4e-8 At3g48420 haloacid dehalogenase-like hydrolase family protein C.G. S.X.
0.01 7e-1 38 Os03g0681100 NM_184872.1 - - 2e+0 At4g28990 RNA-binding protein-related C.G. S.X.
0.01 7e-1 38 Os06g0557400 9634.m03444 - Leucine-rich repeat, typical subtype containingprotein 5e-2 At3g53560 chloroplast lumen common family protein C.G. S.X.
0.01 7e-1 38 Os11g0514100 9639.m02860 - Hypothetical protein 7e-4 At3g48770 ATP binding / DNA binding C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.50 6e-86 319 Arabidopsis thaliana At5g60600 836181 HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) Encodes a chloroplast-localized hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) synthase (HDS), catalyzes the formation of HMBPP from 2-C-methyl-D-erythrytol 2,4-cyclodiphosphate (MEcPP). The HDS enzyme controls the penultimate steps of the biosynthesis of IPP and dimethylallyl diphosphate (DMAPP) via the MEP pathway and may serve as a metabolic control point for SA-mediated disease resistance. In the light, the electrons required for the reaction catalyzed by HDS are directly provided by the electron flow from photosynthesis via ferredoxin. In the dark however, the enzyme requires an electron shuttle: ferredoxin-NADP⁺ reductase. - - - C.G. S.X.
0.40 8e-111 402 Glycine max Gma.11238.1.S1_a_at BQ454110 - - 3e-121 At5g60600 HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) C.G. S.X.
0.71 0 2561 Hordeum vulgare Contig3822_at Contig3822 - - 6e-43 At5g60600 HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) C.G. S.X.
0.24 5e-38 161 Populus trichocarpa PtpAffx.83319.1.S1_s_at CN523183 - - 1e-81 At5g60600 HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) C.G. S.X.
0.49 0 1423 Triticum aestivum Ta.10120.1.S1_at BJ224992 - - 6e-14 At5g60600 HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) C.G. S.X.
0.14 4e-32 139 Vitis vinifera 1613715_at CF211315 hypothetical protein LOC100257071 - 9e-21 At5g60600 HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) C.G. S.X.
0.68 0 1465 Zea mays Zm.10841.1.A1_at BQ619556 hydroxymethylbutenyl 4-diphosphate synthase - 2e-64 At5g60600 HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0016114 The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure.
L GO:0009401 The uptake and phosphorylation of specific carbohydrates from the extracellular environment; uptake and phosphorylation are coupled, making the PTS a link between the uptake and metabolism of sugars; phosphoenolpyruvate is the original phosphate donor; phosphoenolpyruvate passes the phosphate via a signal transduction pathway, to enzyme 1 (E1), which in turn passes it on to the histidine protein, HPr; the next step in the system involves sugar-specific membrane-bound complex, enzyme 2 (EII), which transports the sugar into the cell; it includes the sugar permease, which catalyzes the transport reactions; EII is usually divided into three different domains, EIIA, EIIB, and EIIC.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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