CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0602600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os02g0602600 9630.m03753 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 3e+0 At5g24316 proline-rich family protein S.X. H.G.
0.57 77.0 Os09g0500600 AK066999.1 - DNA topoisomerase III beta-1 (EC 5.99.1.2). Spliceisoform 2 1e-19 At2g32000 DNA topoisomerase family protein S.X. H.G.
0.44 58.1 Os05g0487600 AK059850.1 - Conserved hypothetical protein 7e-16 Atmg00690 - S.X. H.G.
0.42 53.9 Os07g0534200 AK064206.1 - Hypothetical protein 5e-2 At3g20970 NFU4 S.X. H.G.
0.40 51.1 Os01g0293200 AU030398 - Plant specific of unknown function DUF860 familyprotein 1e-2 At3g63090 ubiquitin thiolesterase S.X. H.G.
0.38 46.9 Os03g0222800 AK063432.1 - Hypothetical protein 1e+0 At2g03030 Toll-Interleukin-Resistance (TIR) domain-containing protein S.X. H.G.
0.36 44.0 Os09g0110200 9637.m00069 - Protein prenyltransferase domain containingprotein 8e-2 At1g29710 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.33 38.8 Os01g0659800 AK109718.1 - C2 domain containing protein 4e-2 At5g20900 JAZ12 (JASMONATE-ZIM-DOMAIN PROTEIN 12) S.X. H.G.
0.33 38.8 Os07g0667400 AK073297.1 - SAM (and some other nucleotide) binding motifdomain containing protein 1e-2 At3g45240 GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) S.X. H.G.
0.23 21.2 Os01g0939200 AK110814.1 - Conserved hypothetical protein 3e+0 At4g16210 ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
27.1 99.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.0 99.5 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.6 99.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.4 99.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.7 99.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.7 99.3 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.4 99.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.2 99.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.7 99.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.6 99.1 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-3 46 Os02g0559800 AB045120.1 - Zn-finger, RING domain containing protein 6e-1 At4g24026 unknown protein C.G. S.X.
0.02 1e-3 46 Os03g0140700 AK070000.1 - TPR-like domain containing protein 2e-1 At5g47600 heat shock protein-related C.G. S.X.
0.02 1e-3 46 Os05g0426800 9633.m03275 - Conserved hypothetical protein 5e-6 At1g09812 unknown protein C.G. S.X.
0.02 1e-3 46 Os12g0602200 AK119494.1 - Hypothetical protein 2e-1 At5g28610 - C.G. S.X.
0.01 1e-3 46 Os05g0490000 AK101340.1 - Krr1 family protein 8e-5 At3g24080 KRR1 family protein C.G. S.X.
0.01 1e-3 46 Os11g0139600 AK073051.1 - Scarecrow-like 9 (Fragment) 3e-1 At1g08700 presenilin family protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 34 Arabidopsis thaliana At5g24316 832501 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBFO - - - C.G. S.X.
0.02 1e-3 46 Glycine max HgAffx.12051.1.S1_at CB375931 - - 6e-2 At5g47550 cysteine protease inhibitor, putative / cystatin, putative C.G. S.X.
0.03 9e-5 48 Hordeum vulgare Contig19862_at Contig19862 - - 6e-2 At5g47550 cysteine protease inhibitor, putative / cystatin, putative C.G. S.X.
0.03 1e-3 46 Populus trichocarpa Ptp.4063.3.A1_at DN489930 hypothetical protein - 1e-1 At4g24230 ACBP3 (ACYL-COA-BINDING DOMAIN 3) C.G. S.X.
0.03 3e-3 44 Triticum aestivum Ta.5991.1.A1_at BJ231348 - - 1e+0 At1g04778 unknown protein C.G. S.X.
0.02 5e-2 38 Vitis vinifera 1606551_at CF211871 hypothetical protein LOC100255969 - 6e-30 At4g25660 unknown protein C.G. S.X.
0.02 3e-4 46 Zea mays Zm.11848.1.A1_at CF631118 calmodulin - 3e-1 At1g73630 calcium-binding protein, putative C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage