Gene omics information

Query gene ID	Os02g0589000
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.9	Os02g0589000	AK066288.1	-	Lecithin:cholesterol acyltransferase familyprotein	8e-1	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.77	93.1	Os07g0510500	AK068586.1	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	4e-3	At3g21800	UGT71B8 (UDP-GLUCOSYL TRANSFERASE 71B8)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.71	89.6	Os06g0102100	AK099468.1	-	Cytochrome P450 family protein	1e+0	At5g46020	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.71	89.6	Os10g0320100	AK064736.1	-	Flavonoid 3'-monooxygenase (EC 1.14.13.21)(Flavonoid 3'-hydroxylase) (Cytochrome P450 75B2)	6e-2	At5g07990	TT7 (TRANSPARENT TESTA 7)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os07g0687100	AK062162.1	-	Protein of unknown function DUF341 family protein	9e-3	At4g24380	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os12g0115700	AK099443.1	-	Chalcone-flavanone isomerase family protein	3e+0	At4g04745	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.1	98.8	GSM421683	XOC, 96 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
14.8	98.6	GSM421721	MOCK, 24 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
14.5	98.6	GSM421720	MOCK, 24 hai - rep2	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
14.1	98.5	GSM421681	XOC, 24 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
13.3	98.4	GSM421703	XOO, 96 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
13.1	98.4	GSM421726	MOCK, 96 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
12.3	98.3	GSM421701	XOO, 24 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
11.8	98.3	GSM421719	MOCK, 24 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
11.8	98.3	GSM421723	MOCK, 96 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
11.3	98.2	GSM421682	XOC, 24 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.58	7e-157	555	Os02g0590100	9630.m03617	-	Esterase/lipase/thioesterase domain containingprotein	8e+0	At5g43380	TOPP6	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.41	0	644	Os02g0590400	AK099196.1	-	Lecithin:cholesterol acyltransferase familyprotein	9e-1	At5g63480	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.11	3e-5	52	Os02g0590000	9630.m03616	-	Esterase/lipase/thioesterase domain containingprotein	1e+0	At4g15150	glycine-rich protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e-1	36	Arabidopsis thaliana	At5g47700	834821	60S acidic ribosomal protein P1 (RPP1C)	F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane;MFPOAB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	7e-2	40	Glycine max	PsAffx.psHB037xN12f_s_at	PsAffx.psHB037xN12f	-	-	2e-1	At3g04640	glycine-rich protein	C.G.	S.X.	Please select
0.02	4e-1	36	Hordeum vulgare	Contig18671_at	Contig18671	-	-	4e+0	At1g68400	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please select
0.02	1e+0	36	Populus trichocarpa	PtpAffx.223960.1.S1_s_at	pmrna42186	hypothetical protein	-	3e+0	At2g06255	ELF4-L3 (ELF4-Like 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	2e-1	38	Triticum aestivum	TaAffx.79758.2.S1_x_at	CA724867	-	-	1e+1	At3g16851	unknown protein	C.G.	S.X.	Please select
0.02	6e-5	48	Vitis vinifera	1611550_at	CD800189	hypothetical protein LOC100263619	-	2e-9	At4g11070	WRKY41	C.G.	S.X.	Please select
0.03	9e-2	38	Zea mays	Zm.19319.1.A1_at	BI992453	hypothetical protein LOC100274532	-	7e+0	At5g64560	magnesium transporter CorA-like family protein (MRS2-2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
L	GO:0006629	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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