Gene omics information

Query gene ID	Os02g0588600
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.94	99.4	Os02g0588600	AK066774.1	-	Conserved hypothetical protein	8e+0	At4g18975	pentatricopeptide (PPR) repeat-containing protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.30	32.7	Os04g0391900	AK101777.1	-	Amidohydrolase 2 family protein	3e-9	At2g35450	catalytic/ hydrolase	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.30	32.7	Os03g0355900	CB624404	-	Conserved hypothetical protein	4e-14	At4g31530	binding / catalytic	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.29	31.1	Os02g0744700	AF395537.1	-	-	2e-5	At3g01180	AtSS2 (starch synthase 2)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.20	16.5	Os06g0472000	AK063588.1	-	Mss4-like domain containing protein	3e-11	At1g53670	MSRB1 (methionine sulfoxide reductase B 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.15	10.3	Os05g0555300	AK062997.1	-	Ferredoxin domain containing protein	2e-12	At4g32590	ferredoxin-related	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.12	7.2	Os03g0249200	AK069944.1	-	Conserved hypothetical protein	1e-7	At1g62850	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.10	5.7	Os03g0267300	AK062233.1	-	Fructose-1,6-bisphosphatase, chloroplast precursor(EC 3.1.3.11) (D- fructose-1,6-bisphosphate1-phosphohydrolase) (FBPase)	1e-24	At3g54050	fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.08	4.2	Os05g0292800	AK059562.1	-	One helix protein (OHP)	6e-6	At5g02120	OHP (ONE HELIX PROTEIN)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.5	99.1	GSM174883	A mock 3 dpi rep 1 with array type rice from Affymetrix	GSE7256	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
18.0	98.9	GSM278846	WuYun3-RSV infected, biological rep3	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
16.9	98.8	GSM278853	KT95-418-non-infected, biological rep1	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
16.8	98.8	GSM174884	E mock 4 dpi rep 1 with array type rice from Affymetrix	GSE7256	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
15.9	98.7	GSM278854	KT95-418-non-infected, biological rep2	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
12.1	98.3	GSM278848	WuYun3-non-infected, biological rep2	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
10.9	98.1	GSM278847	WuYun3-non-infected, biological rep1	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
10.6	98.1	GSM174888	C mock 3 dpi rep 2 with array type rice from Affymetrix	GSE7256	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
9.7	98.0	GSM174885	B FR13 3 dpi rep 1 with array type rice from Affymetrix	GSE7256	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
8.9	97.8	GSM278852	KT95-418-RSV infected, biological rep3	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-2	40	Os02g0126900	9630.m00248	-	Phosphatidate cytidylyltransferase family protein	4e-17	At2g45150	phosphatidate cytidylyltransferase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	6e-2	40	Os09g0264400	AK100987.1	-	E-class P450, group I family protein	6e-2	At5g54530	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	2e-1	38	Os01g0212800	NM_188420.1	-	-	5e-1	At5g32440	-	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	4e-3	44	Os10g0488900	AK069090.1	-	-	2e-2	At4g02750	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	6e-2	40	Os01g0181600	NM_189563.1	-	-	1e+0	At4g17810	nucleic acid binding / transcription factor/ zinc ion binding	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	6e-2	40	Os08g0215300	AK121156.1	-	Hypothetical protein	2e+0	At3g59370	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e+0	32	Arabidopsis thaliana	At4g18975	827633	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e+0	34	Glycine max	PsAffx.CL619Contig1_at	PsAffx.CL619Contig1	-	-	6e+0	At5g42635	glycine-rich protein	C.G.	S.X.	Please select
0.30	8e-29	127	Hordeum vulgare	Contig11406_at	Contig11406	-	-	3e-1	At4g16790	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.02	1e+1	32	Populus trichocarpa	PtpAffx.218654.1.S1_at	pmrna34349	hypothetical protein	-	1e+1	At3g62990	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e-1	38	Triticum aestivum	TaAffx.23527.1.S1_x_at	CA733716	-	-	1e+0	At3g52561	unknown protein	C.G.	S.X.	Please select
0.02	9e+0	30	Vitis vinifera	1619376_at	CF204975.1	-	-	8e-61	At5g55190	RAN3 (RAN GTPASE 3)	C.G.	S.X.	Please select
0.02	8e-1	34	Zea mays	Zm.710.1.A1_at	AY103930.1	-	-	6e+0	At2g18210	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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