CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0586900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.87 96.6 Os02g0586900 AK063583.1 - Glycine rich family protein 1e+0 At2g16510 vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5) S.X. H.G.
0.90 97.1 Os06g0139800 AK058604.1 - Acid phosphatase-1(1) (Fragment) 1e-2 At4g29270 acid phosphatase class B family protein S.X. H.G.
0.80 94.6 Os12g0151000 AK107301.1 - Purple acid phosphatase 2e-1 At3g46120 PAP19 (PURPLE ACID PHOSPHATASE 19) S.X. H.G.
0.80 94.6 Os08g0104400 AK064224.1 - Conserved hypothetical protein 2e-2 At3g12960 unknown protein S.X. H.G.
0.78 93.4 Os05g0247800 AK073843.1 - Glycoside hydrolase, family 18 protein 2e+0 At1g64628 CPuORF57 (Conserved peptide upstream open reading frame 57) S.X. H.G.
0.78 93.4 Os03g0693700 AK103716.1 - Oxalate oxidase 1 (EC 1.2.3.4) (Germin) 8e+0 At3g10080 germin-like protein, putative S.X. H.G.
0.76 92.2 Os06g0110200 AK107973.1 - Late embryogenesis abundant (LEA) group 1 familyprotein 1e+0 At4g11250 AGL52 S.X. H.G.
0.69 87.9 Os01g0958200 AK107370.1 - Curculin-like (mannose-binding) lectin domaincontaining protein 3e+0 At1g79500 2-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA) S.X. H.G.
0.55 73.7 Os01g0225600 AK063645.1 - Late embryogenesis abundant protein Lea14-A 4e-1 At1g01470 LEA14 (LATE EMBRYOGENESIS ABUNDANT 14) S.X. H.G.
0.44 58.1 Os07g0213600 AK107696.1 - Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein 3e-1 At5g61660 glycine-rich protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
152.6 100.0 GSM159219 Seed (S5, 21 - 29 dap), biological rep 1 GSE6893 Expression data for reproductive development in rice
97.3 100.0 GSM159221 Seed (S5, 21 - 29 dap), biological rep 3 GSE6893 Expression data for reproductive development in rice
85.5 100.0 GSM159220 Seed (S5, 21 - 29 dap), biological rep 2 GSE6893 Expression data for reproductive development in rice
23.2 99.3 GSM159271 Rice coleoptiles, 4 days old, anoxic, REPLICATE 1 (Sample #11) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
21.5 99.2 GSM159218 Seed (S4, 11 - 20 dap), biological rep 3 GSE6893 Expression data for reproductive development in rice
12.7 98.4 GSM159272 Rice coleoptiles, 4 days old, anoxic, REPLICATE 2 (Sample #12) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
10.1 98.0 GSM159217 Seed (S4, 11 - 20 dap), biological rep 2 GSE6893 Expression data for reproductive development in rice
3.6 95.5 GSM159216 Seed (S4, 11 - 20 dap), biological rep 1 GSE6893 Expression data for reproductive development in rice
2.1 92.4 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
1.1 85.9 GSM359912 IR29 root, salt-treated, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 2e-4 48 Os02g0587000 AK062460.1 - Glycine-rich protein 6e+0 At1g30515 unknown protein C.G. S.X.
0.05 2e-4 48 Os05g0571900 9633.m04665 - - 9e-3 At1g64340 unknown protein C.G. S.X.
0.04 3e-6 54 Os01g0585300 AK099180.1 - Protein of unknown function DUF1118 family protein 5e-3 At1g74730 unknown protein C.G. S.X.
0.04 5e-5 50 Os03g0619900 9631.m04067 - - 8e-1 At4g13720 inosine triphosphate pyrophosphatase, putative / HAM1 family protein C.G. S.X.
0.03 1e-5 52 Os12g0568900 AK068276.1 - Thaumatin, pathogenesis-related family protein 5e-1 At5g55570 unknown protein C.G. S.X.
0.02 2e-4 48 Os01g0956300 AK109878.1 - Conserved hypothetical protein 4e+0 At3g13229 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At2g16510 816150 vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5) F:ATPase activity;P:ATP synthesis coupled proton transport;C:plasma membrane, vacuole;MOFBPA - - - C.G. S.X.
0.04 2e-3 44 Glycine max PsAffx.CL1640Contig1_at PsAffx.CL1640Contig1 - - 3e+0 At4g27350 unknown protein C.G. S.X.
0.10 2e-7 56 Hordeum vulgare Contig9698_at Contig9698 - - 3e-1 At4g20390 integral membrane family protein C.G. S.X.
0.04 1e-1 38 Populus trichocarpa Ptp.6319.2.S1_a_at CF237038 hypothetical protein - 6e-27 At1g66230 MYB20 (myb domain protein 20) C.G. S.X.
0.05 4e-7 56 Triticum aestivum Ta.6174.1.S1_at CA635455 - - 5e+0 At5g59230 transcription factor-related C.G. S.X.
0.03 6e+0 30 Vitis vinifera 1620986_at CF372684 - - 2e-2 At2g31957 LCR75 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 75) C.G. S.X.
0.05 1e-2 40 Zea mays Zm.4164.1.A1_x_at BM079246 - - 5e+0 At3g01860 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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