CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0586500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 73.7 Os02g0586500 AK101525.1 - Small nuclear ribonucleoprotein Sm D1 (snRNP coreprotein D1) (Sm-D1) (Sm-D autoantigen) 7e-12 At4g02840 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative S.X. H.G.
0.67 87.2 Os03g0424200 AK069682.1 - Protein kinase domain containing protein 5e-1 At5g62627 - S.X. H.G.
0.61 81.2 Os06g0295500 AK119433.1 - Hypothetical protein 3e-2 At5g66815 unknown protein S.X. H.G.
0.48 63.7 Os12g0198500 9640.m00905 - Hypothetical protein 2e+0 At5g66658 unknown protein S.X. H.G.
0.43 55.4 Os01g0391500 BI812884 - Conserved hypothetical protein 5e+0 Atmg00270 - S.X. H.G.
0.38 46.9 Os04g0478600 AK073788.1 - Conserved hypothetical protein 3e-3 At4g21160 ZAC S.X. H.G.
0.38 46.9 Os01g0388500 CF294425 - Conserved hypothetical protein 3e+0 At5g47710 C2 domain-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
51.9 99.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
32.6 99.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
30.6 99.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
26.7 99.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.4 99.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.9 99.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.0 99.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.4 99.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.2 99.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.7 99.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 2e-23 109 Os04g0470200 CA763570 - Small nuclear ribonucleoprotein (Sm protein)family protein 1e-17 At4g02840 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative C.G. S.X.
0.04 7e-1 34 Os06g0653300 CB632641 - Hypothetical protein 4e-1 At5g67620 unknown protein C.G. S.X.
0.01 2e-1 40 Os03g0100800 AK068699.1 - Plasma membrane H+-ATPase 2e-31 At5g62670 AHA11 (Arabidopsis H(+)-ATPase 11) C.G. S.X.
0.01 8e-1 38 Os05g0584300 AK063149.1 - Harpin-induced 1 domain containing protein 5e-1 At1g01640 speckle-type POZ protein-related C.G. S.X.
0.01 8e-1 38 Os11g0182200 AK099589.1 - Transferase family protein 7e-1 At3g06840 unknown protein C.G. S.X.
0.01 3e+0 36 Os07g0471300 AK069685.1 - Argonaute 4 protein 5e+0 At5g43810 ZLL (ZWILLE) C.G. S.X.
0.01 7e-1 34 Os03g0283500 AK103244.1 - TPR-like domain containing protein 5e-3 At2g37310 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 7e-12 73 Arabidopsis thaliana At4g02840 828163 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative F:molecular_function unknown;P:unknown;C:nucleolus, small nucleolar ribonucleoprotein complex, nucleus, plasma membrane, membrane;MFOP - - - C.G. S.X.
0.12 4e-17 91 Glycine max Gma.15848.1.S1_at AW348925 - - 1e-41 At4g02840 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative C.G. S.X.
0.17 7e-69 262 Hordeum vulgare Contig8999_at Contig8999 - - 1e-13 At3g07590 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative C.G. S.X.
0.12 1e-29 133 Populus trichocarpa PtpAffx.43886.1.A1_at CV233615 hypothetical protein - 9e-36 At4g02840 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative C.G. S.X.
0.16 6e-71 270 Triticum aestivum Ta.1561.1.S1_at CK154803 - - 5e-10 At3g07590 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative C.G. S.X.
0.05 8e-9 61 Vitis vinifera 1607016_at CF371958 hypothetical protein LOC100256258 - 5e-34 At4g02840 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative C.G. S.X.
0.16 4e-64 246 Zea mays Zm.16766.1.A1_at AY104512.1 small nuclear ribonucleoprotein Sm D1 - 2e-21 At3g07590 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006397 Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
L GO:0008380 The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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