Gene omics information

Query gene ID	Os02g0580400
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	81.2	Os02g0580400	AK103053.1	-	Dynein light chain, type 1 family protein	1e-4	At1g23220	dynein light chain type 1 family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.73	91.1	Os03g0769400	AK068827.1	-	Conserved hypothetical protein	7e-2	At3g50780	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.27	27.5	Os04g0686200	AK121864.1	-	Chromosome condensation regulator protein(Fragment)	2e-15	At5g42140	zinc finger protein, putative / regulator of chromosome condensation (RCC1) family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.20	16.5	Os04g0546300	AK102945.1	-	GMPK2=PROTEIN kinase	3e-45	At2g44830	protein kinase, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.19	15.1	Os05g0143400	9633.m00447	-	Eukaryotic protein of unknown function DUF873family protein	5e-3	At5g49010	SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.14	9.3	Os01g0647700	AK100691.1	-	Epoxide hydrolase family protein	2e-5	At1g80280	hydrolase, alpha/beta fold family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.9	99.3	GSM409432	9311_young panicle 2cm, biological rep3	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
16.9	98.8	GSM409433	9311_young panicle 2cm, biological rep4	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
16.8	98.8	GSM409434	9311_young panicle 2cm, biological rep5	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
16.2	98.8	GSM409430	9311_young panicle 2cm, biological rep1	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
14.7	98.6	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
13.9	98.5	GSM409431	9311_young panicle 2cm, biological rep2	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
10.9	98.1	GSM159187	SAM, biological rep 2	GSE6893	Expression data for reproductive development in rice
9.0	97.8	GSM159186	SAM, biological rep 1	GSE6893	Expression data for reproductive development in rice
8.2	97.7	GSM409422	Nipponbare_young panicle 2cm, biological rep2	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
8.2	97.7	GSM159188	SAM, biological rep 3	GSE6893	Expression data for reproductive development in rice

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.27	3e-53	210	Os04g0462600	AK111125.1	-	Dynein light chain, type 1 family protein	1e-4	At1g23220	dynein light chain type 1 family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.05	4e-3	44	Os07g0574700	9635.m03856	-	-	3e-1	At1g07950	surfeit locus protein 5 family protein / SURF5 family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	4e-3	44	Os06g0273500	AK106309.1	-	Protein of unknown function DUF231 domaincontaining protein	3e+0	At5g35375	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	4e-3	44	Os11g0156700	AK108381.1	-	Hypothetical protein	2e-3	At3g50550	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	4e-3	44	Os03g0627300	AK106686.1	-	ATP binding protein-like	4e-25	At4g19540	INDL (IND1(IRON-SULFUR PROTEIN REQUIRED FOR NADH DEHYDROGENASE)-LIKE)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	4e-3	44	Os06g0273400	AK108774.1	-	Conserved hypothetical protein	2e-4	At5g15900	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	4e-3	44	Os12g0600200	AK102450.1	-	Hypothetical protein	5e-7	At1g06770	DRIP1 (DREB2A-INTERACTING PROTEIN 1)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	1e-4	48	Arabidopsis thaliana	At1g23220	838931	dynein light chain type 1 family protein	F:microtubule motor activity;P:microtubule-based process;C:microtubule associated complex;MOPF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	1e-11	71	Glycine max	Gma.1054.1.S1_at	AW186376	-	-	1e-9	At1g23220	dynein light chain type 1 family protein	C.G.	S.X.	Please select
0.03	1e-3	44	Hordeum vulgare	Contig17462_at	Contig17462	-	-	1e+0	At1g70895	CLE17 (CLAVATA3/ESR-RELATED 17)	C.G.	S.X.	Please select
0.13	9e-10	65	Populus trichocarpa	PtpAffx.54853.1.S1_at	CV245501	hypothetical protein	-	4e-20	At1g23220	dynein light chain type 1 family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.23	1e-32	141	Triticum aestivum	TaAffx.51165.1.S1_at	CA730084	-	-	3e-1	At5g60490	FLA12	C.G.	S.X.	Please select
0.02	6e-1	34	Vitis vinifera	1617034_at	CB342279	hypothetical protein LOC100248287	-	1e+0	At5g09480	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.29	3e-81	301	Zea mays	Zm.3122.1.A1_at	CB381414	microtubule motor	-	6e-7	At1g23220	dynein light chain type 1 family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
L	GO:0007017	Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins.

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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