CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0579600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 93.1 Os02g0579600 AY177696.1 - Transcription factor MADS27 7e-19 At3g57230 AGL16 (AGAMOUS-LIKE 16) S.X. H.G.
0.61 81.2 Os12g0183200 9640.m00762 - 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7)(3'(2'),5- bisphosphonucleoside 3'(2')-phosphohydrolase)(DPNPase) 3e-2 At5g63990 3'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative S.X. H.G.
0.56 76.3 Os05g0489900 AK070533.1 - Calcium/calmodulin-dependent protein kinase 2e-5 At4g09570 CPK4 S.X. H.G.
0.48 63.7 Os12g0639200 AK122160.1 - AAA ATPase, central region domain containingprotein 4e-3 At4g05380 AAA-type ATPase family protein S.X. H.G.
0.47 62.3 Os10g0390600 AK107029.1 - 1-aminocyclopropane-1-carboxylate synthase familyprotein 4e-7 At1g72330 ALAAT2 (ALANINE AMINOTRANSFERASE 2) S.X. H.G.
0.33 38.8 Os11g0152700 AK102690.1 - Transcription factor HBP-1b(C38) (Fragment) 3e-1 At1g77920 bZIP family transcription factor S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.6 98.4 GSM262001 IAC165, 2 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
10.4 98.1 GSM262013 Nipponbare, 2 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
10.0 98.0 GSM262000 IAC165, 2 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
9.9 98.0 GSM431929 Root- +Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
9.9 98.0 GSM431930 Root- +Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
9.9 98.0 GSM262005 IAC165, 4 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
9.6 97.9 GSM262004 IAC165, 4 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
9.5 97.9 GSM262012 Nipponbare, 2 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
9.2 97.9 GSM431931 Root- -Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
8.5 97.7 GSM431932 Root- -Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.42 2e-87 323 Os04g0461300 9632.m03661 - MADS-box transcription factor MADS2 3e-7 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
0.30 3e-30 133 Os06g0347700 9634.m02365 - - 5e-4 At4g37940 AGL21 C.G. S.X.
0.25 9e-31 135 Os08g0431900 AY345220.1 - Transcription factor MADS23 6e-6 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
0.21 9e-37 155 Os04g0304400 AK102927.1 - MADS-box protein AGL16-II 6e-7 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
0.20 1e-34 149 Os02g0731200 AY177702.1 - Transcription factor MADS57 3e-12 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 7e-19 95 Arabidopsis thaliana At3g57230 824890 AGL16 (AGAMOUS-LIKE 16) MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes. - - - C.G. S.X.
0.09 1e-2 42 Glycine max GmaAffx.71421.1.S1_at AW706936 - - 4e-21 At2g14210 AGL44 (AGAMOUS-LIKE 44) C.G. S.X.
0.11 5e-12 71 Hordeum vulgare Contig16350_at Contig16350 - - 9e-3 At3g57390 AGL18 C.G. S.X.
0.25 1e-14 81 Populus trichocarpa PtpAffx.201979.1.S1_at pmrna3951 hypothetical protein - 3e-26 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
0.14 1e-11 71 Triticum aestivum Ta.27569.1.A1_at CD890142 MADS-box transcription factor TaAGL35 - 8e-2 At5g51870 AGL71 (AGAMOUS-LIKE 71) C.G. S.X.
0.05 3e-3 42 Vitis vinifera 1614123_at CF373459 PISTILLATA-like MADS-box protein-like - 8e-9 At5g20240 PI (PISTILLATA) C.G. S.X.
0.47 4e-86 317 Zea mays Zm.524.1.S1_at AF112149.1 MADS box protein 2 - 6e-17 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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