CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0578400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os02g0578400 9630.m03520 - Photosystem II oxygen evolving complex proteinPsbQ family protein 4e-7 At1g14150 oxygen evolving enhancer 3 (PsbQ) family protein S.X. H.G.
0.73 91.1 Os04g0119000 AK120328.1 - Conserved hypothetical protein 2e+0 At3g17710 F-box family protein S.X. H.G.
0.56 76.3 Os07g0105600 AK068377.1 - Photosystem II oxygen evolving complex proteinPsbQ family protein 1e-1 At5g56840 DNA-binding family protein S.X. H.G.
0.55 73.7 Os10g0533100 AK111957.1 - Conserved hypothetical protein 5e-1 At2g40020 - S.X. H.G.
0.50 68.0 Os07g0489800 AK068191.1 - Ferredoxin domain containing protein 5e-1 At3g16250 NDF4 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1) S.X. H.G.
0.50 68.0 Os01g0676200 AK070436.1 - Conserved hypothetical protein 2e+0 At4g13720 inosine triphosphate pyrophosphatase, putative / HAM1 family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
37.4 99.8 GSM267999 Green leaves in F9G RILs from parents lines GSE10872 Molecular characterization and genetic analysis reveal SA0420 as an early senescing rice mutant with pleotropic
29.2 99.7 GSM431940 Shoot- -Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
21.3 99.2 GSM431939 Shoot- -Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
17.3 98.9 GSM421675 XOC, 8 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
17.2 98.8 GSM267998 Yellow leaves in F9Y RILs from parents lines GSE10872 Molecular characterization and genetic analysis reveal SA0420 as an early senescing rice mutant with pleotropic
15.8 98.7 GSM421717 MOCK, 8 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
15.4 98.7 GSM421716 MOCK, 8 hai - rep2 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
15.4 98.7 GSM207565 Mudanjiang8 wild type control rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
15.3 98.7 GSM207566 Mudanjiang8 wild type control rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
14.7 98.6 GSM421695 XOO, 8 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e-2 40 Os02g0542900 9630.m03213 - - 3e-1 At4g30460 glycine-rich protein C.G. S.X.
0.03 4e-2 40 Os02g0734700 9630.m04916 - Conserved hypothetical protein 1e+0 At1g17520 DNA-binding protein, putative C.G. S.X.
0.03 4e-2 40 Os05g0198200 9633.m00959 - Glutaredoxin domain containing protein 1e-1 At4g33040 glutaredoxin family protein C.G. S.X.
0.02 4e-2 40 Os02g0613100 9630.m03851 - - 6e-1 At1g07135 glycine-rich protein C.G. S.X.
0.02 4e-2 40 Os04g0109900 9632.m00097 - Exostosin-like family protein 4e-2 At5g25310 catalytic C.G. S.X.
0.01 4e-2 40 Os01g0512300 AK107048.1 - Conserved hypothetical protein 5e-1 At1g60720 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 4e-7 56 Arabidopsis thaliana At1g14150 837974 oxygen evolving enhancer 3 (PsbQ) family protein F:calcium ion binding;P:photosynthesis;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast;P - - - C.G. S.X.
0.07 3e-2 40 Glycine max Gma.2737.1.S1_at BI968473 - - 2e-6 At1g14150 oxygen evolving enhancer 3 (PsbQ) family protein C.G. S.X.
0.56 1e-140 498 Hordeum vulgare Contig15111_at Contig15111 - - 2e-2 At1g14150 oxygen evolving enhancer 3 (PsbQ) family protein C.G. S.X.
0.03 1e-1 38 Populus trichocarpa PtpAffx.56127.2.A1_a_at CV262320 hypothetical protein - 4e-7 At1g14150 oxygen evolving enhancer 3 (PsbQ) family protein C.G. S.X.
0.43 1e-127 456 Triticum aestivum Ta.1426.1.S1_x_at CA621850 - - 3e-2 At1g14150 oxygen evolving enhancer 3 (PsbQ) family protein C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1616938_at CA814215 - - 9e-1 At5g38470 DNA repair protein RAD23, putative C.G. S.X.
0.03 9e-3 40 Zea mays Zm.9753.1.A1_at BM337948 Grx_C15 - glutaredoxin subgroup III - 2e+1 At2g43261 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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