CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0573500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.82 95.0 Os02g0573500 AK121678.1 - Monosaccharide transporter 1 2e-1 At4g21480 carbohydrate transmembrane transporter/ sugar:hydrogen symporter S.X. H.G.
0.67 87.2 Os04g0652700 AK106059.1 - Nuclease I 6e-1 At2g37000 TCP family transcription factor, putative S.X. H.G.
0.58 77.0 Os01g0185900 NM_189614.1 - WRKY transcription factor 1 (WRKY DNA-bindingprotein 1) (Zinc- dependent activator protein 1)(Transcription factor ZAP1) 4e-1 At4g04450 WRKY42 S.X. H.G.
0.56 76.3 Os02g0712700 9630.m04699 - Legume lectin, beta domain containing protein 3e-4 At5g06740 lectin protein kinase family protein S.X. H.G.
0.55 73.7 Os06g0692100 AK110293.1 - Protein kinase domain containing protein 1e-1 At1g48480 RKL1 S.X. H.G.
0.54 71.9 Os01g0652300 AK063136.1 - Hypothetical protein 5e+0 At1g30475 - S.X. H.G.
0.52 69.6 Os02g0108800 AK099951.1 - Conserved hypothetical protein 5e-2 At1g04555 unknown protein S.X. H.G.
0.51 68.7 Os02g0512000 AK108786.1 - Auxin responsive SAUR protein family protein 2e-1 At5g33390 glycine-rich protein S.X. H.G.
0.49 64.4 Os03g0368900 AK120411.1 - Haem peroxidase, plant/fungal/bacterial familyprotein 1e-2 At5g64120 peroxidase, putative S.X. H.G.
0.48 63.7 Os04g0682100 AK070539.1 - C2 domain containing protein 3e-1 At4g08980 F-box family protein (FBW2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
34.1 99.8 GSM149411 Rice Bala 0ppm Arsenate (Control) Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
22.9 99.3 GSM154833 Root_tZ-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
21.6 99.2 GSM154938 Root_tZ-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
20.8 99.2 GSM359910 IR29 root, salt-treated, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
20.5 99.1 GSM154937 Root_tZ-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
12.3 98.3 GSM195226 Root GSE7951 Genome-wide gene expression profiling of rice stigma
12.3 98.3 GSM359912 IR29 root, salt-treated, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
11.2 98.2 GSM154944 Root_tZ-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
9.8 98.0 GSM154943 Root_tZ-treatment_120min_replicate 2 GSE6719 Cytokinin responsive genes in rice
9.7 98.0 GSM359911 IR29 root, salt-treated, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.54 1e-56 222 Os02g0574100 AK068280.1 - General substrate transporter family protein 9e-1 At5g25940 early nodulin-related C.G. S.X.
0.44 3e-61 238 Os02g0574000 AK099415.1 - Monosaccharide transporter 1 2e-1 At1g11260 STP1 (SUGAR TRANSPORTER 1) C.G. S.X.
0.22 7e-28 127 Os04g0453300 9632.m03584 - Monosaccharide transporter 1 7e-1 At1g11260 STP1 (SUGAR TRANSPORTER 1) C.G. S.X.
0.21 7e-28 127 Os04g0454200 AK072059.1 - Monosaccharide transporter 1 6e-2 At1g34580 monosaccharide transporter, putative C.G. S.X.
0.21 3e-24 115 Os04g0453200 AK121306.1 - Monosaccharide transporter 1 7e-2 At1g34580 monosaccharide transporter, putative C.G. S.X.
0.16 7e-31 137 Os01g0567500 AK069327.1 - Monosaccharide transporter 3 1e-9 At1g11260 STP1 (SUGAR TRANSPORTER 1) C.G. S.X.
0.15 1e-23 113 Os01g0567600 NM_193582.1 - H(+)/MONOSACCHARIDE cotransporter 5e-8 At4g21480 carbohydrate transmembrane transporter/ sugar:hydrogen symporter C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 38 Arabidopsis thaliana At4g21480 828233 carbohydrate transmembrane transporter/ sugar:hydrogen symporter F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAV - - - C.G. S.X.
0.02 3e-1 38 Glycine max GmaAffx.46696.1.S1_at BQ081755 - - 2e-1 At1g34580 monosaccharide transporter, putative C.G. S.X.
0.15 2e-12 73 Hordeum vulgare Contig7293_at Contig7293 - - 1e+1 At5g37780 CAM1 (CALMODULIN 1) C.G. S.X.
0.01 1e+0 36 Populus trichocarpa PtpAffx.143510.1.S1_s_at CK091696 hypothetical protein - 1e-1 At3g56020 60S ribosomal protein L41 (RPL41G) C.G. S.X.
0.33 2e-128 460 Triticum aestivum TaAffx.65159.1.S1_at BJ258761 - - 4e+0 At5g01445 unknown protein C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1610744_at CF415597 hypothetical protein LOC100258016 - 1e+0 At2g47170 ARF1A1C C.G. S.X.
0.09 3e-14 79 Zea mays Zm.13072.1.S1_at CD438321 hypothetical protein LOC100193044 - 7e+0 At5g12880 proline-rich family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006810 The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
L GO:0008643 The directed movement of carbohydrate into, out of, within or between cells. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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