CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0562600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os02g0562600 AK121163.1 - Mlo-related protein family protein 1e-4 At4g02600 MLO1 S.X. H.G.
0.73 91.1 Os07g0680400 AK110900.1 - DNA-binding WRKY domain containing protein 1e-3 At2g30250 WRKY25 S.X. H.G.
0.67 87.2 Os12g0432600 AK108851.1 - Zn-finger, RING domain containing protein 2e+0 At5g47220 ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2) S.X. H.G.
0.53 71.3 Os01g0916100 CB645166 - Conserved hypothetical protein 4e-2 At1g67570 unknown protein S.X. H.G.
0.44 58.1 Os01g0787600 AK121948.1 - Ethylene-induced esterase 2e+0 At5g05830 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.43 55.4 Os01g0916000 AK106300.1 - Conserved hypothetical protein 1e-2 At5g02560 HTA12 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
38.0 99.8 GSM431926 Root- +Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
26.7 99.6 GSM431927 Root- -Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
25.8 99.5 GSM431928 Root- -Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
23.3 99.4 GSM431925 Root- +Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
22.9 99.3 GSM154829 Root_DMSO-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
19.1 99.0 GSM149411 Rice Bala 0ppm Arsenate (Control) Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
18.2 98.9 GSM154831 Root_DMSO-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
16.5 98.8 GSM154832 Root_DMSO-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
13.6 98.5 GSM154943 Root_tZ-treatment_120min_replicate 2 GSE6719 Cytokinin responsive genes in rice
12.6 98.4 GSM154939 Root_DMSO-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-23 113 Os05g0418100 AK121347.1 - Mlo (Fragment) 1e-4 At4g24250 MLO13 (MILDEW RESISTANCE LOCUS O 13) C.G. S.X.
0.04 3e-3 46 Os02g0197200 AK066134.1 - Mlo-related protein family protein 1e-2 At4g24250 MLO13 (MILDEW RESISTANCE LOCUS O 13) C.G. S.X.
0.03 6e-17 91 Os04g0444400 9632.m03491 - Mlo-related protein family protein 7e-4 At1g26700 MLO14 (MILDEW RESISTANCE LOCUS O 14) C.G. S.X.
0.03 1e-11 73 Os01g0888600 AK121374.1 - MLO-like protein 1 (AtMlo1) (MLO protein homolog1) (AtMLO-H1) 1e-6 At4g02600 MLO1 C.G. S.X.
0.01 5e-5 52 Os11g0181700 AK065928.1 - Short-chain dehydrogenase Tic32 3e-1 At1g08080 ACA7 (ALPHA CARBONIC ANHYDRASE 7) C.G. S.X.
0.01 8e-4 48 Os03g0129100 AF384030.1 - Seven transmembrane protein MLO2 7e-2 At1g26700 MLO14 (MILDEW RESISTANCE LOCUS O 14) C.G. S.X.
0.01 8e-4 48 Os06g0486300 AF388195.1 - Mlo 6e-2 At2g39200 MLO12 (MILDEW RESISTANCE LOCUS O 12) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-4 50 Arabidopsis thaliana At4g02600 828229 MLO1 A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO1 belongs to the clade II, with ATMLO13 and ATMLO15. The gene is expressed during early seedling growth, in root and cotyledon vascular system, in pollen and in papillae, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). - - - C.G. S.X.
0.03 6e-4 48 Glycine max GmaAffx.25834.1.S1_at BE020055 - - 1e-34 At4g02600 MLO1 C.G. S.X.
0.11 2e-17 91 Hordeum vulgare Contig13968_at Contig13968 - - 4e-1 At4g02600 MLO1 C.G. S.X.
0.06 1e-7 59 Populus trichocarpa PtpAffx.217531.1.S1_at pmrna32831 hypothetical protein - 6e-14 At4g02600 MLO1 C.G. S.X.
0.22 7e-43 176 Triticum aestivum Ta.27345.1.S1_at CA745732 - - 9e-1 At1g42560 MLO9 (MILDEW RESISTANCE LOCUS O 9) C.G. S.X.
0.01 2e+0 34 Vitis vinifera 1613164_at CF513407 - - 5e+0 At5g44345 F-box family protein-related C.G. S.X.
0.06 7e-7 56 Zea mays Zm.682.1.S1_at AY029314.1 barley mlo defense gene homolog3 - 9e-1 At4g02600 MLO1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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