CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0546050

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 79.7 Os02g0546050 9630.m03255 - - 1e+1 At4g28750 PSAE-1 (PSA E1 KNOCKOUT) S.X. H.G.
0.92 99.1 Os12g0211400 9640.m01026 - HhH-GPD family protein 7e-1 At4g17310 unknown protein S.X. H.G.
0.60 79.7 Os03g0612800 9631.m04004 - - 1e+0 At3g29305 unknown protein S.X. H.G.
0.55 73.7 Os07g0453000 NM_187150.1 - Conserved hypothetical protein 2e+0 At1g50460 HKL1 (HEXOKINASE-LIKE 1) S.X. H.G.
0.55 73.7 Os04g0152000 9632.m00594 - - 2e-4 At5g45530 unknown protein S.X. H.G.
0.53 71.3 Os11g0671700 9639.m04167 - - 1e-1 At3g13830 F-box family protein S.X. H.G.
0.33 38.8 Os07g0692800 9635.m04977 - Protein synthesis initiation factor eIF2 alpha 3e-21 At2g40290 eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
91.1 100.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
28.0 99.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.2 99.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.8 99.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.1 99.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.1 99.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.7 99.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.5 99.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.3 99.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.7 99.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 8e-2 38 Os05g0223700 9633.m01184 - - 2e+0 At3g24010 ING1 (INHIBITOR OF GROWTH 1) C.G. S.X.
0.03 8e-2 38 Os04g0673400 9632.m05639 - Uracil-DNA glycosylase (EC 3.2.2.-) (UDG) 3e-9 At3g18630 uracil DNA glycosylase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e+1 30 Arabidopsis thaliana At4g28750 828996 PSAE-1 (PSA E1 KNOCKOUT) mutant has Decreased effective quantum yield of photosystem II; Pale green plants; Reduced growth rate; Subunit E of Photosystem I - - - C.G. S.X.
0.06 9e-1 34 Glycine max PsAffx.psZG004xB16f_s_at PsAffx.psZG004xB16f - - 2e+0 At2g37630 AS1 (ASYMMETRIC LEAVES 1) C.G. S.X.
0.03 1e+0 32 Hordeum vulgare EBca01_SQ005_D03_at EBca01_SQ005_D03 - - 2e-2 At1g06090 fatty acid desaturase family protein C.G. S.X.
0.04 9e-1 34 Populus trichocarpa PtpAffx.95082.1.A1_at CV259402 - - 6e-2 At5g56460 protein kinase, putative C.G. S.X.
0.06 3e+0 32 Triticum aestivum TaAffx.106178.1.S1_at CA723559 - - 2e+0 At3g61950 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.04 3e+0 30 Vitis vinifera 1606467_at CB345570 - - 4e+0 At1g66080 unknown protein C.G. S.X.
0.03 4e+0 30 Zea mays Zm.6387.1.A1_at AI691246 protein kinase G11A - 2e-8 At5g55910 D6PK (D6 PROTEIN KINASE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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