Gene omics information

Query gene ID	Os02g0534800
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.9	Os02g0534800	AK101459.1	-	40S ribosomal protein S14 (Clone MCH2)	3e-67	At3g11510	40S ribosomal protein S14 (RPS14B)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.61	81.2	Os06g0701400	AK121229.1	-	60S acidic ribosomal protein P3 (P1/P2-like) (P3A)	1e-1	At3g28560	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os04g0598200	BX897823	-	60S ribosomal protein L12	2e-21	At3g53430	60S ribosomal protein L12 (RPL12B)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.40	51.1	Os01g0686800	D38231.1	-	Guanine nucleotide-binding protein betasubunit-like protein (GPB-LR) (RWD)	1e-23	At1g18080	ATARCA	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.38	46.9	Os03g0343500	AB117995.1	-	60S ribosomal protein L22-2	2e-24	At3g05560	60S ribosomal protein L22-2 (RPL22B)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.33	38.8	Os02g0591700	AK072777.1	-	Ribosomal protein L6 (Fragment)	9e-6	At1g74060	60S ribosomal protein L6 (RPL6B)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.0	97.0	GSM275414	Azucena root tip_Before the wax layer_rep1	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.0	97.0	GSM275407	Azucena root tip_At the wax layer_rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.4	96.8	GSM275408	Bala root tip_At the wax layer_rep1	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.3	96.7	GSM275411	Azucena root tip_Buckled at the wax layer_rep1	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.3	96.7	GSM275406	Azucena root tip_At the wax layer_rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.0	96.6	GSM275412	Azucena root tip Buckled at the wax layer_rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.8	96.5	GSM275405	Azucena root tip_At the wax layer_rep1	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.6	96.3	GSM275416	Azucena root tip_Before the wax layer_Rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.6	96.3	GSM275413	Azucena root tip_Buckled at the wax layer_rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.2	96.0	GSM275409	Bala root tip_At the wax layer_rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.48	2e-146	519	Os04g0413600	AK121192.1	-	40S ribosomal protein S14 (Clone MCH2)	4e-84	At3g11510	40S ribosomal protein S14 (RPS14B)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.41	0	880	Os01g0720700	AK102935.1	-	Serine acetyltransferase	3e-58	At3g11510	40S ribosomal protein S14 (RPS14B)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.41	6e-79	295	Os02g0162500	AK121223.1	-	40S ribosomal protein S14 (Clone MCH1)	1e-81	At3g52580	40S ribosomal protein S14 (RPS14C)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.05	1e-21	105	Os01g0196800	AK072341.1	-	Hypothetical protein	9e-2	At3g02580	STE1 (STEROL 1)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	8e-20	99	Os10g0511600	AK073197.1	-	Peptidase S28 family protein	5e-12	At4g36195	serine carboxypeptidase S28 family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	2e-17	91	Os01g0943700	AK066782.1	-	Hypothetical protein	8e-2	At1g11240	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	4e-12	73	Os04g0463300	AK119417.1	-	Pentatricopeptide repeat containing protein	7e-3	At1g09680	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	3e-10	67	Os08g0427000	AK067877.1	-	Hypothetical protein	1e-1	At2g17740	DC1 domain-containing protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	3e-67	256	Arabidopsis thaliana	At3g11510	820324	40S ribosomal protein S14 (RPS14B)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus;BOPMAF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.40	2e-68	260	Glycine max	GmaAffx.90477.1.S1_x_at	CF806202	-	-	2e-45	At2g36160	40S ribosomal protein S14 (RPS14A)	C.G.	S.X.	Please select
0.49	7e-162	569	Hordeum vulgare	Contig324_at	Contig324	-	-	1e-74	At3g11510	40S ribosomal protein S14 (RPS14B)	C.G.	S.X.	Please select
0.33	4e-39	163	Populus trichocarpa	Ptp.6885.1.S1_at	CV258716	hypothetical protein	-	3e-73	At3g52580	40S ribosomal protein S14 (RPS14C)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.44	9e-83	307	Triticum aestivum	Ta.26625.1.A1_at	CD491396	-	-	7e-89	At3g52580	40S ribosomal protein S14 (RPS14C)	C.G.	S.X.	Please select
0.33	2e-34	145	Vitis vinifera	1610548_at	CB346216	hypothetical protein LOC100256298	-	4e-56	At2g36160	40S ribosomal protein S14 (RPS14A)	C.G.	S.X.	Please select
0.47	9e-158	555	Zea mays	Zm.9791.1.S1_at	AY110405.1	hypothetical protein LOC100216896	-	1e-78	At3g52580	40S ribosomal protein S14 (RPS14C)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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