CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0530100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 95.8 Os02g0530100 AF198626.1 - Copper chaperone homolog CCH 2e-9 At3g56240 CCH (COPPER CHAPERONE) S.X. H.G.
0.33 38.8 Os06g0238300 AK107758.1 - FMN-binding split barrel domain containing protein 2e+0 At5g54490 PBP1 (PINOID-BINDING PROTEIN 1) S.X. H.G.
0.13 8.2 Os06g0594100 BI306514 - Enoyl-CoA hydratase/isomerase domain containingprotein 3e-1 At4g33800 unknown protein S.X. H.G.
0.12 7.2 Os01g0574600 AK064876.1 - Gamma hydroxybutyrate dehydrogenase (EC 1.1.1.61) 4e-5 At1g17650 GLYR2 (GLYOXYLATE REDUCTASE 2) S.X. H.G.
0.07 3.7 Os03g0654400 AK066436.1 - Cationic amino acid transporter-like protein 4e-13 At5g36940 CAT3 (CATIONIC AMINO ACID TRANSPORTER 3) S.X. H.G.
0.02 1.0 Os03g0823100 AK103844.1 - Sugar transporter-like protein 8e-26 At5g59250 sugar transporter family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.8 98.0 GSM387561 Transgenic line 22, biological rep. 3 GSE15448 Glycinebetaine-induced water-stress tolerance in codA-expressing transgenic indica rice
9.8 98.0 GSM387556 Transgenic line 4, biological rep. 1 GSE15448 Glycinebetaine-induced water-stress tolerance in codA-expressing transgenic indica rice
9.5 97.9 GSM387558 Transgenic line 4, biological rep. 3 GSE15448 Glycinebetaine-induced water-stress tolerance in codA-expressing transgenic indica rice
9.4 97.9 GSM387560 Transgenic line 22, biological rep. 2 GSE15448 Glycinebetaine-induced water-stress tolerance in codA-expressing transgenic indica rice
9.1 97.9 GSM387562 Wild-type, biological rep. 1 GSE15448 Glycinebetaine-induced water-stress tolerance in codA-expressing transgenic indica rice
8.4 97.7 GSM302914 emb6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
8.0 97.6 GSM387557 Transgenic line 4, biological rep. 2 GSE15448 Glycinebetaine-induced water-stress tolerance in codA-expressing transgenic indica rice
7.6 97.5 GSM387559 Transgenic line 22, biological rep. 1 GSE15448 Glycinebetaine-induced water-stress tolerance in codA-expressing transgenic indica rice
7.2 97.4 GSM387563 Wild-type, biological rep. 2 GSE15448 Glycinebetaine-induced water-stress tolerance in codA-expressing transgenic indica rice
6.5 97.2 GSM302915 emb6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 3e-176 619 Os01g0385400 AK064337.1 - C4-dicarboxylate transporter/malic acid transportprotein family protein 3e-7 At5g24030 SLAH3 (SLAC1 HOMOLOGUE 3) C.G. S.X.
0.23 4e-12 73 Os08g0205400 9636.m01008 - Copper chaperone 1e-3 At1g66240 ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1) C.G. S.X.
0.21 8e-63 242 Os05g0219900 AK120886.1 - Conserved hypothetical protein 3e-4 At5g24030 SLAH3 (SLAC1 HOMOLOGUE 3) C.G. S.X.
0.17 6e-39 163 Os12g0513800 AK107995.1 - Hypothetical protein 1e+1 At5g49280 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.16 1e-21 105 Os02g0537200 AK102851.1 - Cyclin-like F-box domain containing protein 1e+0 At5g24770 VSP2 (VEGETATIVE STORAGE PROTEIN 2) C.G. S.X.
0.14 8e-26 119 Os07g0181100 AK109854.1 - C4-dicarboxylate transporter/malic acid transportprotein family protein 7e-2 At5g24030 SLAH3 (SLAC1 HOMOLOGUE 3) C.G. S.X.
0.13 8e-26 119 Os01g0226600 AK121458.1 - C4-dicarboxylate transporter/malic acid transportprotein family protein 2e-5 At5g24030 SLAH3 (SLAC1 HOMOLOGUE 3) C.G. S.X.
0.03 1e-2 42 Os01g0757900 AK105476.1 - Haloacid dehalogenase/epoxide hydrolase familyprotein 9e-1 At5g01810 CIPK15 (CBL-INTERACTING PROTEIN KINASE 15) C.G. S.X.
0.02 1e-2 42 Os03g0383900 AK069713.1 - Heavy metal transport/detoxification proteindomain containing protein 5e-7 At4g39700 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related C.G. S.X.
0.01 1e-2 42 Os02g0601800 AK121891.1 - Bromodomain containing protein 3e-2 At2g22080 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 2e-9 63 Arabidopsis thaliana At3g56240 824790 CCH (COPPER CHAPERONE) CCH protein belongs to a family of eukaryotic proteins that participate in intracellular copper homeostasis by delivering this metal to the secretory pathway; mainly located along the vascular bundles of senescing leaves and petioles as well as in stem sieve elements; hypothesized to have a role in copper mobilization from decaying organs towards reproductive structures, as a result of metalloprotein breakdown. The plant-specific C-terminal domain of the CCH protein forms amyloid-like fibrils in vitro. - - - C.G. S.X.
0.14 3e-12 73 Glycine max Gma.1321.1.S1_at AF198627.1 copper chaperone homolog CCH - 6e-34 At3g56240 CCH (COPPER CHAPERONE) C.G. S.X.
0.18 2e-47 188 Hordeum vulgare Contig6788_at Contig6788 - - 1e+0 At2g20362 unknown protein C.G. S.X.
0.09 4e-8 59 Populus trichocarpa Ptp.4526.1.A1_x_at AY603358.1 hypothetical protein - 1e-28 At3g56240 CCH (COPPER CHAPERONE) C.G. S.X.
0.23 1e-50 200 Triticum aestivum Ta.28488.1.S1_at CK205419 - - 6e+0 At3g10990 F-box family protein C.G. S.X.
0.16 3e-18 91 Vitis vinifera 1617180_s_at CA814162 hypothetical protein LOC100247137 - 2e-33 At3g56240 CCH (COPPER CHAPERONE) C.G. S.X.
0.19 6e-26 117 Zea mays Zm.15083.2.A1_at AY107613.1 hypothetical protein LOC100276197 - 6e-4 At3g56240 CCH (COPPER CHAPERONE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0006826 The directed movement of iron (Fe) ions into, out of, within or between cells.
L GO:0030001 The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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