CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0510100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 79.7 Os02g0510100 AK058487.1 - The start codon is not identified. 6e-18 At2g43810 small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative S.X. H.G.
0.50 68.0 Os07g0583000 AK121047.1 - Ribosome associated membrane RAMP4 family protein 1e-7 At1g27350 - S.X. H.G.
0.44 58.1 Os04g0408900 AK058627.1 - DNA binding protein S1FA family protein 2e-6 At2g37120 DNA-binding S1FA family protein S.X. H.G.
0.40 51.1 Os03g0811700 AK059288.1 - Pre-mRNA branch site p14-like protein 6e-31 At5g12190 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.27 27.5 Os07g0659100 BI796809 - Ankyrin repeat containing protein 2e+0 At1g07880 ATMPK13 S.X. H.G.
0.27 27.5 Os05g0295800 AK070232.1 - Glyoxalase I (EC 4.4.1.5) 2e-10 At1g08110 lactoylglutathione lyase, putative / glyoxalase I, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.3 97.9 GSM302917 endo6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
5.2 96.7 GSM195229 Endosperm GSE7951 Genome-wide gene expression profiling of rice stigma
5.0 96.6 GSM302916 endo6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
4.9 96.5 GSM240995 Zhonghua11 7 DAF, biological replicate 2 GSE9498 Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
4.9 96.5 GSM159215 Seed (S3, 5 - 10 dap), biological rep 3 GSE6893 Expression data for reproductive development in rice
4.5 96.3 GSM195230 5d-seed GSE7951 Genome-wide gene expression profiling of rice stigma
4.4 96.2 GSM240997 gif1 7 DAF, biological replicate 1 GSE9498 Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
4.2 96.0 GSM100443 Rice Bala 0ppm Arsenate (Control) Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
3.9 95.8 GSM159214 Seed (S3, 5 - 10 dap), biological rep 2 GSE6893 Expression data for reproductive development in rice
3.9 95.8 GSM159213 Seed (S3, 5 - 10 dap), biological rep 1 GSE6893 Expression data for reproductive development in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-3 44 Os04g0445200 AK062427.1 - Predicted enzyme of the cupin superfamily 1e+0 At5g42635 glycine-rich protein C.G. S.X.
0.02 2e-1 38 Os07g0228400 AK109909.1 - Cyclin-like F-box domain containing protein 3e-1 At3g42310 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.30 6e-18 91 Arabidopsis thaliana At2g43810 818985 small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative F:molecular_function unknown;P:unknown;C:small nucleolar ribonucleoprotein complex, nucleus;MAFOP - - - C.G. S.X.
0.23 6e-22 105 Glycine max Gma.2690.1.S1_at AW350941 - - 7e-39 At3g59810 small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative C.G. S.X.
0.30 4e-42 171 Hordeum vulgare Contig6149_at Contig6149 - - 4e-16 At2g43810 small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative C.G. S.X.
0.22 1e-26 121 Populus trichocarpa Ptp.5377.1.S1_at BU832261 hypothetical protein - 1e-25 At2g43810 small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative C.G. S.X.
0.31 5e-37 155 Triticum aestivum Ta.14566.2.S1_at CA623958 - - 7e-17 At2g43810 small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative C.G. S.X.
0.18 4e-10 63 Vitis vinifera 1621726_at CF211619 hypothetical protein LOC100259432 - 1e-40 At3g59810 small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative C.G. S.X.
0.04 2e+0 32 Zea mays Zm.16897.1.A1_at BM267564 - - 2e+1 At5g11260 HY5 (ELONGATED HYPOCOTYL 5) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006397 Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
L GO:0008380 The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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