CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0456000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 91.1 Os02g0456000 AK119496.1 - - 4e-6 At4g01400 - S.X. H.G.
0.73 91.1 Os01g0818100 NM_191091.1 - - 2e-8 At5g01990 auxin efflux carrier family protein S.X. H.G.
0.60 79.7 Os02g0159400 AK109550.1 - Hypothetical protein 8e-2 At3g46666 unknown protein S.X. H.G.
0.46 60.9 Os12g0626000 AK109499.1 - Hypothetical protein 9e-3 At3g13570 SCL30a S.X. H.G.
0.40 51.1 Os09g0413300 9637.m02118 - TPR-like domain containing protein 3e-1 At4g02750 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.34 40.0 Os07g0555300 AK071161.1 - Hypothetical protein 9e-2 At3g22840 ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
38.4 99.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
31.4 99.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
30.1 99.7 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
28.5 99.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.1 99.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.4 99.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.1 99.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.3 99.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.5 99.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.5 99.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-3 46 Os11g0186900 AK105491.1 - 1-aminocyclopropane-1-carboxylate oxidase 2e-13 At1g05010 EFE (ETHYLENE-FORMING ENZYME) C.G. S.X.
0.01 8e-3 44 Os01g0580500 AK102472.1 - 1-aminocyclopropane-1-carboxylate oxidase(Fragment) 3e-12 At1g05010 EFE (ETHYLENE-FORMING ENZYME) C.G. S.X.
0.01 8e-3 44 Os09g0451000 AK065039.1 - 1-aminocyclopropane-1-carboxylate oxidase 1 (EC1.14.17.4) (ACC oxidase 1) (Ethylene-forming enzyme)(EFE) 1e-11 At1g12010 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative C.G. S.X.
0.01 3e-2 42 Os07g0516400 NM_187395.1 - Conserved hypothetical protein 2e+0 At5g27690 heavy-metal-associated domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e-6 54 Arabidopsis thaliana At4g01400 827943 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB - - - C.G. S.X.
0.02 4e-1 38 Glycine max HgAffx.21639.1.S1_at BI748114 - - 7e-1 At2g33000 ubiquitin-associated (UBA)/TS-N domain-containing protein-related C.G. S.X.
0.02 2e-3 44 Hordeum vulgare Contig2640_s_at Contig2640 - - 3e-20 At1g05010 EFE (ETHYLENE-FORMING ENZYME) C.G. S.X.
0.05 2e-6 56 Populus trichocarpa PtpAffx.202305.1.S1_at pmrna4611 hypothetical protein - 8e-35 At4g01400 - C.G. S.X.
0.11 2e-45 184 Triticum aestivum TaAffx.31073.1.S1_at CA619727 - - 4e+0 At3g25880 auxin-resistance protein, putative C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1611848_at CF568803 - - 4e-3 At5g43410 ethylene-responsive factor, putative C.G. S.X.
0.01 4e-1 36 Zea mays ZmAffx.96.1.S1_at AI665410 - - 1e+1 At4g39130 dehydrin family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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