CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0437200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 82.7 Os02g0437200 AK065640.1 - SNAP-34 1e+0 At1g68760 ATNUDX1 (ARABIDOPSIS THALIANA NUDIX HYDROLASE 1) S.X. H.G.
0.93 99.2 Os02g0126400 AF194413.1 - Protein kinase CPK1 6e-30 At2g17890 CPK16 S.X. H.G.
0.88 96.8 Os10g0580900 AK072734.1 - Conserved hypothetical protein 5e-8 At4g25030 unknown protein S.X. H.G.
0.64 83.4 Os02g0205500 AK067907.1 - Naringenin-chalcone synthase family protein 7e-5 At5g43760 KCS20 (3-KETOACYL-COA SYNTHASE 20) S.X. H.G.
0.50 68.0 Os03g0285800 AF332873.1 - MAP kinase 1 (MAP kinase MAPK5a) 8e-4 At2g43790 ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) S.X. H.G.
0.50 68.0 Os03g0241300 AK072703.1 - Hypothetical protein 1e+0 At3g49010 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) S.X. H.G.
0.46 60.9 Os03g0402800 AK061842.1 - ZIM domain containing protein 2e+0 At1g19180 JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1) S.X. H.G.
0.44 58.1 Os01g0908700 AK120427.1 - Heterogeneous nuclear ribonucleoprotein A2 homolog1 (hnRNP A2(A)) 2e-17 At1g67800 copine-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
28.1 99.6 GSM159184 Y Leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
16.0 98.7 GSM154946 Leaf_DMSO-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
13.5 98.5 GSM278844 WuYun3-RSV infected, biological rep1 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
11.6 98.2 GSM375766 gid1-3_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
11.4 98.2 GSM154951 Leaf_DMSO-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
11.3 98.2 GSM159185 Y Leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
11.3 98.2 GSM154947 Leaf_DMSO-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
11.2 98.2 GSM278850 KT95-418-RSV infected, biological rep1 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
11.1 98.2 GSM375767 gid1-3_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
11.1 98.2 GSM154945 Leaf_DMSO-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 7e-16 87 Os02g0529500 AK069978.1 - SNAP25-like protein C (Fragment) 1e-1 At3g48600 SWIB complex BAF60b domain-containing protein C.G. S.X.
0.02 4e-8 61 Os04g0487000 AK111312.1 - Conserved hypothetical protein 9e-2 At1g18170 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein C.G. S.X.
0.02 6e-4 48 Os05g0285900 AK073229.1 - Hypothetical protein 2e+0 At5g05330 DNA binding C.G. S.X.
0.02 2e-3 46 Os06g0117250 9634.m00190 - - 1e+0 At1g03140 splicing factor Prp18 family protein C.G. S.X.
0.01 9e-3 44 Os07g0696000 AK108592.1 - Hypothetical protein 3e-1 At5g25970 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 36 Arabidopsis thaliana At1g68760 843207 ATNUDX1 (ARABIDOPSIS THALIANA NUDIX HYDROLASE 1) Encodes a cytosol localized nudix hydrolase that hydrolizes 8-oxo-dGTP.Involved in suppressing oxidative DNA damage. - - - C.G. S.X.
0.02 3e-2 42 Glycine max Gma.5170.1.A1_at BQ628737 - - 5e-9 At1g13890 SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30) C.G. S.X.
0.19 4e-14 79 Hordeum vulgare Contig12026_at Contig12026 - - 3e-2 At4g32714 SCRL25 (SCR-Like 25) C.G. S.X.
0.03 4e-1 38 Populus trichocarpa PtpAffx.11720.1.S1_at CV256791 hypothetical protein - 1e-5 At5g61210 SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) C.G. S.X.
0.20 6e-21 103 Triticum aestivum Ta.29930.1.S1_at BJ273225 - - 5e+0 At5g60500 undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein C.G. S.X.
0.02 3e-1 36 Vitis vinifera 1613679_at BQ798757 - - 7e-5 At5g61210 SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) C.G. S.X.
0.23 4e-23 109 Zea mays Zm.9079.1.A1_at CN844993 hypothetical protein LOC100217287 - 6e-3 At1g13890 SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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