CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0301800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.81 94.8 Os02g0301800 AK067818.1 - Disease resistance protein family protein 5e-1 At5g20310 - S.X. H.G.
0.62 81.5 Os03g0616300 AK102930.1 - DNA-directed polymerase kappa 2e-8 At1g49980 DNA-directed DNA polymerase/ damaged DNA binding S.X. H.G.
0.54 71.9 Os01g0811300 AK065227.1 - - 2e+0 At1g73100 SUVH3 (SU(VAR)3-9 HOMOLOG 3) S.X. H.G.
0.48 63.7 Os08g0166500 AK103907.1 - Hypothetical protein 5e-2 At3g09735 DNA-binding S1FA family protein S.X. H.G.
0.48 63.7 Os03g0849700 AK111868.1 - TPR-like domain containing protein 1e-1 At4g02750 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.47 62.3 Os08g0520400 AK064309.1 - Conserved hypothetical protein 2e+0 At5g23940 EMB3009 (embryo defective 3009) S.X. H.G.
0.46 60.9 Os03g0192800 AK110648.1 - Peptidase C19, ubiquitin carboxyl-terminalhydrolase 2 family protein 1e-5 At3g49600 UBP26 (UBIQUITIN-SPECIFIC PROTEASE 26) S.X. H.G.
0.42 53.9 Os02g0301000 AK063049.1 - Zn-finger, C-x8-C-x5-C-x3-H type domain containingprotein 7e-8 At1g01350 nucleic acid binding / protein binding / zinc ion binding S.X. H.G.
0.41 52.4 Os08g0484400 AK065727.1 - Bacterial Fmu (Sun)/eukaryotic nucleolarNOL1/Nop2p domain containing protein 4e-10 At2g22400 NOL1/NOP2/sun family protein S.X. H.G.
0.35 41.7 Os07g0598300 AK122151.1 - SNF2-related domain containing protein 3e-11 At5g07810 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
57.5 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
27.6 99.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.7 99.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.2 99.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.3 98.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5 98.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2 98.7 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 2e-23 113 Os10g0571100 CA999969 - Conserved hypothetical protein 3e-11 At3g60150 unknown protein C.G. S.X.
0.04 3e-16 89 Os07g0189400 AK106788.1 - Cyclin-like F-box domain containing protein 1e-3 At5g08150 unknown protein C.G. S.X.
0.04 2e-5 54 Os11g0657900 9639.m04042 - Disease resistance protein family protein 4e-1 At3g07500 far-red impaired responsive family protein / FAR1 family protein C.G. S.X.
0.03 3e-7 59 Os11g0130900 9639.m00273 - NB-ARC domain containing protein 6e+0 At4g17440 unknown protein C.G. S.X.
0.02 1e-6 57 Os08g0412100 AK072641.1 - Disease resistance protein family protein 2e+0 At2g28440 proline-rich family protein C.G. S.X.
0.02 4e-6 56 Os12g0270300 AK070311.1 - Disease resistance protein family protein 2e+0 At2g41430 ERD15 (EARLY RESPONSIVE TO DEHYDRATION 15) C.G. S.X.
0.02 2e-5 54 Os11g0588400 AK066872.1 - Disease resistance protein family protein 4e-1 At3g50550 unknown protein C.G. S.X.
0.01 2e-5 54 Os11g0629600 AK105472.1 - BTB/POZ domain containing protein 2e+0 At5g60620 phospholipid/glycerol acyltransferase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 5e-1 38 Arabidopsis thaliana At5g20310 832153 - F:molecular_function unknown;P:unknown;C:cellular_component unknown;PO - - - C.G. S.X.
0.01 7e-1 38 Glycine max Gma.13500.1.A1_at CD399280 - - 3e+0 At5g18940 Mo25 family protein C.G. S.X.
0.03 2e-1 38 Hordeum vulgare Mlk_3pri12_s_at Mlk_3pri12 Mla7 protein - 2e+0 At4g01265 raffinose synthase family protein / seed imbibition protein-related C.G. S.X.
0.01 7e-1 38 Populus trichocarpa PtpAffx.202558.1.S1_at pmrna5128 cc-nbs-lrr resistance protein - 2e-2 At1g27400 60S ribosomal protein L17 (RPL17A) C.G. S.X.
0.04 2e-3 46 Triticum aestivum Ta.257.1.S1_at AF149114.1 stripe rust resistance protein Yr10 - 1e+0 At5g67500 VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) C.G. S.X.
0.01 1e-1 38 Vitis vinifera 1617272_at CF518232 zinc finger RING-type protein-like - 1e-3 At3g54780 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 8e-1 36 Zea mays Zm.7604.1.A1_at CF626298 hypothetical protein LOC100193443 - 4e-1 At3g18430 calcium-binding EF hand family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006915 A form of programmed cell death that begins when a cell receives internal or external signals that trigger the activity of proteolytic caspases, proceeds through a series of characteristic stages typically including rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), and plasma membrane blebbing (but maintenance of its integrity until the final stages of the process), and ends with the death of the cell.
L GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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