Gene omics information

Query gene ID	Os02g0293400
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.9	Os02g0293400	AK072985.1	-	Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven inabsentia homolog 5). Splice isoform 2	6e-45	At3g61790	seven in absentia (SINA) family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os05g0357800	AK060514.1	-	Phospholipid/glycerol acyltransferase familyprotein	2e-4	At1g80950	phospholipid/glycerol acyltransferase family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.60	79.7	Os08g0440000	AK102539.1	-	Vesicle transport v-SNARE family protein	2e-3	At1g15880	GOS11 (golgi snare 11)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.60	79.7	Os01g0507500	AK102891.1	-	Conserved hypothetical protein	2e-1	At1g71080	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.22	19.4	Os09g0413000	AK062467.1	-	Hypothetical protein	8e-4	At2g02960	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.14	9.3	Os04g0568900	AK070267.1	-	RES protein	2e-7	At1g12760	protein binding / ubiquitin-protein ligase/ zinc ion binding	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.1	97.1	GSM159203	Inflorescence (P5, 15 - 22 cm), biological rep 3	GSE6893	Expression data for reproductive development in rice
5.5	96.8	GSM159202	Inflorescence (P5, 15 - 22 cm), biological rep 2	GSE6893	Expression data for reproductive development in rice
5.1	96.6	GSM159201	Inflorescence (P5, 15 - 22 cm), biological rep 1	GSE6893	Expression data for reproductive development in rice
5.0	96.6	GSM302919	leaf_rep2	GSE11966	Expression data from rice embryo,endosperm,root,leaf and seedling
3.5	95.3	GSM159196	Inflorescence (P3, 5 - 10 cm), biological rep 2	GSE6893	Expression data for reproductive development in rice
2.8	94.3	GSM149411	Rice Bala 0ppm Arsenate (Control) Rep3	GSE4471	Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
2.8	94.3	GSM302918	leaf_rep1	GSE11966	Expression data from rice embryo,endosperm,root,leaf and seedling
2.7	94.1	GSM159197	Inflorescence (P3, 5 - 10 cm), biological rep 3	GSE6893	Expression data for reproductive development in rice
2.7	94.1	GSM159195	Inflorescence (P3, 5 - 10 cm), biological rep 1	GSE6893	Expression data for reproductive development in rice
2.6	93.8	GSM159198	Inflorescence (P4, 10 - 15 cm), biological rep 1	GSE6893	Expression data for reproductive development in rice

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.92	0	2101	Os05g0238200	9633.m01306	-	Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven inabsentia homolog 5)	6e-20	At3g61790	seven in absentia (SINA) family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.53	0	728	Os01g0234900	NM_188653.1	-	Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven inabsentia homolog 5). Splice isoform 2	1e-38	At3g61790	seven in absentia (SINA) family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.19	3e-20	101	Os07g0659800	AK107155.1	-	Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven inabsentia homolog 5). Splice isoform 2	5e-8	At3g61790	seven in absentia (SINA) family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.16	2e-27	125	Os02g0128800	AK119901.1	-	Seven in absentia protein family protein	3e-15	At4g27880	seven in absentia (SINA) family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.09	2e-28	129	Os03g0297700	AK120200.1	-	The start codon is not identified.	3e+0	At5g10310	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	7e-6	54	Os03g0837700	9631.m06138	-	Heat shock protein DnaJ, N-terminal domaincontaining protein	4e-4	At2g17420	NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.39	6e-45	182	Arabidopsis thaliana	At3g61790	825352	seven in absentia (SINA) family protein	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination;C:nucleus;MPOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.27	3e-29	131	Glycine max	Gma.5088.2.S1_at	CA937805	-	-	4e-36	At3g61790	seven in absentia (SINA) family protein	C.G.	S.X.	Please select
0.46	0	708	Hordeum vulgare	Contig6334_at	Contig6334	-	-	6e-57	At3g61790	seven in absentia (SINA) family protein	C.G.	S.X.	Please select
0.36	2e-51	204	Populus trichocarpa	PtpAffx.19537.2.S1_s_at	CV225503	hypothetical protein	-	4e-104	At3g61790	seven in absentia (SINA) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.43	0	706	Triticum aestivum	Ta.29541.1.S1_at	CK196948	-	-	3e-50	At3g61790	seven in absentia (SINA) family protein	C.G.	S.X.	Please select
0.40	4e-77	287	Vitis vinifera	1609250_at	Y18471.1	SINA1p	-	2e-60	At3g61790	seven in absentia (SINA) family protein	C.G.	S.X.	Please select
0.46	0	765	Zea mays	Zm.378.1.S1_at	CO532007	seven in absentia homolog	-	3e-25	At3g61790	seven in absentia (SINA) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
L	GO:0006511	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein.
L	GO:0007275	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
L	GO:0016567	The process by which one or more ubiquitin moieties are added to a protein.

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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