CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0280400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os02g0280400 AK111701.1 - Protein kinase-like protein 9e-36 At4g28880 ckl3 (Casein Kinase I-like 3) S.X. H.G.
0.46 60.9 Os09g0123200 AY331574.1 - Paraneoplastic encephalomyelitis antigen familyprotein 1e-10 At4g16280 FCA S.X. H.G.
0.46 60.9 Os03g0754900 AK106405.1 - Cleavage stimulation factor 50K chain (Cleavagestimulation factor 50) 2e-1 At5g60940 transducin family protein / WD-40 repeat family protein S.X. H.G.
0.43 55.4 Os05g0593300 AK106591.1 - Conserved hypothetical protein 6e-9 At3g24870 DNA binding S.X. H.G.
0.38 46.9 Os11g0183700 AK066941.1 - SWIRM domain containing protein 2e-2 At1g21700 ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) S.X. H.G.
0.26 25.6 Os03g0344300 AK068651.1 - SUMO protease 3e-7 At4g00690 ULP1B (UB-LIKE PROTEASE 1B) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.0 98.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.1 97.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.6 97.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.3 97.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8 97.0 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8 97.0 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.7 96.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.7 96.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.6 96.9 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.6 96.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 3e-110 400 Os01g0231500 AK111602.1 - Casein kinase I 2e-43 At4g28860 ckl4 (Casein Kinase I-like 4) C.G. S.X.
0.14 1e-178 628 Os02g0280500 AK058486.1 - Glyoxalase I 1e-10 At1g67280 lactoylglutathione lyase, putative / glyoxalase I, putative C.G. S.X.
0.11 4e-20 101 Os02g0810400 AK111554.1 - Dual specificity kinase 1 4e-68 At3g23340 ckl10 (Casein Kinase I-like 10) C.G. S.X.
0.10 1e-13 79 Os04g0514800 AK111987.1 - Dual specificity kinase 1 7e-48 At1g03930 ADK1 (dual specificity kinase 1) C.G. S.X.
0.09 2e-12 75 Os05g0593800 AK111911.1 - Casein kinase I (Fragment) 4e-59 At4g26100 CK1 (CASEIN KINASE 1) C.G. S.X.
0.08 4e-20 101 Os02g0714000 AK067428.1 - RGP-3 (Fragment) 3e-1 At1g22910 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.06 1e-8 63 Os10g0476300 AK120765.1 - Casein kinase I, delta isoform (EC 2.7.1.-)(CKI-delta) (CKId) (Fragment) 7e-51 At3g23340 ckl10 (Casein Kinase I-like 10) C.G. S.X.
0.03 4e-9 65 Os11g0530200 9639.m02968 - - 2e+0 Atmg01000 - C.G. S.X.
0.02 6e-8 61 Os08g0191700 AK066092.1 - Glyoxalase I family protein 2e-13 At1g11840 ATGLX1 (GLYOXALASE I HOMOLOG) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 9e-36 153 Arabidopsis thaliana At4g28880 829009 ckl3 (Casein Kinase I-like 3) F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOBPFVA - - - C.G. S.X.
0.26 2e-77 291 Glycine max Gma.15087.2.S1_at CA800369 - - 1e-94 At4g28860 ckl4 (Casein Kinase I-like 4) C.G. S.X.
0.17 6e-23 109 Hordeum vulgare Contig12001_at Contig12001 - - 1e-1 At5g57015 ckl12 (Casein Kinase I-like 12) C.G. S.X.
0.09 6e-13 77 Populus trichocarpa PtpAffx.75129.2.S1_s_at CF231604 hypothetical protein - 9e-120 At3g23340 ckl10 (Casein Kinase I-like 10) C.G. S.X.
0.41 0 682 Triticum aestivum TaAffx.128466.1.S1_x_at CK162583 - - 1e-21 At4g28860 ckl4 (Casein Kinase I-like 4) C.G. S.X.
0.24 4e-57 222 Vitis vinifera 1620908_at CD013688 hypothetical protein LOC100247344 - 3e-102 At4g28880 ckl3 (Casein Kinase I-like 3) C.G. S.X.
0.30 5e-162 571 Zea mays Zm.13119.1.S1_at AY104133.1 casein kinase I isoform delta-like - 7e-45 At4g28880 ckl3 (Casein Kinase I-like 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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