CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0280300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.84 96.0 Os02g0280300 9630.m01680 - Xyloglucan endotransglycosylase (Fragment) 2e-3 At4g14130 XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7) S.X. H.G.
0.19 15.1 Os01g0308200 AK110806.1 - Hypothetical protein 2e-1 At2g32640 unknown protein S.X. H.G.
0.18 13.7 Os10g0204275 NM_195445.1 - - 4e-1 At5g48550 F-box family protein-related S.X. H.G.
0.15 10.3 Os04g0597300 AK110912.1 - DNA-binding WRKY domain containing protein 3e-25 At2g34830 WRKY35 (WRKY DNA-binding protein 35) S.X. H.G.
0.14 9.3 Os05g0301300 9633.m02092 - - 3e-1 At1g66540 cytochrome P450, putative S.X. H.G.
0.11 6.5 Os03g0304200 9631.m01894 - - 1e+0 At1g15140 oxidoreductase NAD-binding domain-containing protein S.X. H.G.
0.07 3.7 Os11g0160000 9639.m00537 - Arabidopsis conserved protein family protein 4e-1 At4g22810 DNA-binding protein-related S.X. H.G.
0.07 3.7 Os09g0357600 9637.m01626 - - 2e+0 At5g55510 P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter S.X. H.G.
0.04 2.0 Os10g0539200 9638.m03556 - - 2e+0 At3g10815 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
48.9 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
35.7 99.8 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.7 99.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.1 99.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.5 99.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.0 99.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.0 99.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.3 99.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.2 99.1 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.0 99.0 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.35 2e-97 357 Os02g0280200 9630.m05910 - Beta-glucanase family protein 2e-3 At4g28850 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative C.G. S.X.
0.17 4e-52 206 Os06g0335900 AK120283.1 - Xyloglucan endotransglycosylase XET2 (Fragment) 7e-2 At5g66300 NAC105 (NAC DOMAIN CONTAINING PROTEIN 105) C.G. S.X.
0.13 6e-8 59 Os08g0237800 9636.m01388 - Xyloglucan endotransglycosylase (Fragment) 5e-4 At4g14130 XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7) C.G. S.X.
0.11 4e-9 63 Os04g0604200 AK063614.1 - - 1e-4 At4g25820 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) C.G. S.X.
0.09 4e-9 63 Os04g0604800 9632.m04978 - Xyloglucan endotransglycosylase (Fragment) 4e-4 At4g25820 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) C.G. S.X.
0.08 9e-4 46 Os02g0453500 AK063216.1 - Conserved hypothetical protein 3e-2 At1g54095 unknown protein C.G. S.X.
0.06 2e-4 48 Os06g0696400 AK104912.1 - Xyloglycan endo-transglycosylase precursor 7e-10 At5g57550 XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3) C.G. S.X.
0.03 9e-4 46 Os06g0697000 AK120345.1 - Xyloglucan endotransglucosylase/hydrolase proteinA precursor (EC 2.4.1.207) (VaXTH1) 3e-12 At4g25820 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 2e-3 44 Arabidopsis thaliana At4g14130 827051 XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7) xyloglucan endotransglycosylase-related protein (XTR7) - - - C.G. S.X.
0.03 2e-1 38 Glycine max GmaAffx.1165.1.S1_at BI425542 - - 5e-2 At2g28090 heavy-metal-associated domain-containing protein C.G. S.X.
0.20 2e-10 65 Hordeum vulgare Contig14666_s_at Contig14666 - - 7e+0 At2g06095 unknown protein C.G. S.X.
0.06 4e-5 50 Populus trichocarpa PtpAffx.1317.1.A1_x_at CN550376 hypothetical protein - 2e-21 At5g13870 EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4) C.G. S.X.
0.37 9e-52 204 Triticum aestivum Ta.17446.1.S1_at CA620928 - - 4e-1 At5g57540 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative C.G. S.X.
0.04 3e-2 38 Vitis vinifera 1619068_at CF215954 hypothetical protein LOC100250461 - 1e-13 At4g14130 XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7) C.G. S.X.
0.05 3e-6 52 Zea mays Zm.8890.1.S1_a_at BM379881 hypothetical protein LOC100191584 - 1e-8 At4g25820 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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