CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0258900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 73.7 Os02g0258900 AK100565.1 - Molybdopterin biosynthesis CNX2 protein(Molybdenum cofactor biosynthesis enzyme CNX2) 2e-23 At2g31955 CNX2 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2) S.X. H.G.
0.46 60.9 Os07g0160300 AK065685.1 - Conserved hypothetical protein 7e-1 At1g32290 unknown protein S.X. H.G.
0.44 58.1 Os10g0516300 CB620164 - Electron transfer flavoprotein-ubiquinoneoxidoreductase, mitochondrial precursor (EC 1.5.5.1)(ETF-QO) (ETF-ubiquinone oxidoreductase) (ETFdehydrogenase) (Electron-transferring- flavoproteindehydrogenase). Splice isoform 2 8e-17 At2g43400 ETFQO (electron-transfer flavoprotein:ubiquinone oxidoreductase) S.X. H.G.
0.27 27.5 Os05g0125500 CB660386 - Isovaleryl-CoA dehydrogenase, mitochondrialprecursor (EC 1.3.99.10) (IVD) 1e-26 At3g45300 IVD (ISOVALERYL-COA-DEHYDROGENASE) S.X. H.G.
0.12 7.2 Os06g0153900 AK101884.1 - Thiol methyltransferase 2 4e-2 At2g43910 thiol methyltransferase, putative S.X. H.G.
0.11 6.5 Os08g0424200 AK060716.1 - Methylcrotonyl-CoA carboxylase beta chain,mitochondrial precursor (EC 6.4.1.4)(3-Methylcrotonyl-CoA carboxylase 2) (MCCase betasubunit) (3-methylcrotonyl-CoA:carbon dioxide ligase betasubunit) 2e-26 At4g34030 MCCB (3-METHYLCROTONYL-COA CARBOXYLASE) S.X. H.G.
0.10 5.7 Os09g0449600 AK065937.1 - Aconitase (EC 4.2.1.3) 3e-5 At2g05710 aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
21.1 99.2 GSM304653 Mutant stable line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
20.5 99.1 GSM304669 Control for the stable mutant rice line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
18.1 98.9 GSM304654 Mutant stable line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
15.5 98.7 GSM304664 Control for the stable mutant rice line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
12.0 98.3 GSM173091 Rice OsSRT1 RNAi transgenic line LM1 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
8.6 97.8 GSM304397 Control for the stable transgenic rice line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
8.3 97.7 GSM304395 Control for the stable transgenic rice line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
7.3 97.5 GSM387562 Wild-type, biological rep. 1 GSE15448 Glycinebetaine-induced water-stress tolerance in codA-expressing transgenic indica rice
6.9 97.3 GSM431934 Shoot- +Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
6.6 97.3 GSM387558 Transgenic line 4, biological rep. 3 GSE15448 Glycinebetaine-induced water-stress tolerance in codA-expressing transgenic indica rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.81 0 1935 Os12g0507000 AK065402.1 - Molybdopterin synthase (CNX2) 1e-33 At2g31955 CNX2 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2) C.G. S.X.
0.03 8e-6 54 Os05g0498700 AK065975.1 - Gda-1 protein 2e-11 At3g27090 - C.G. S.X.
0.03 1e-4 50 Os01g0566900 AK100223.1 - 3'-5' exonuclease domain containing protein 5e-14 At2g25910 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein C.G. S.X.
0.03 5e-4 48 Os01g0668000 AK061159.1 - Nuclear movement protein domain containing protein 4e-11 At5g58740 nuclear movement family protein C.G. S.X.
0.03 5e-4 48 Os09g0326900 AK067685.1 - - 7e-36 At1g36730 eukaryotic translation initiation factor 5, putative / eIF-5, putative C.G. S.X.
0.02 1e-4 50 Os03g0326300 AK066058.1 - Zn-finger, RING domain containing protein 6e-2 At3g47980 integral membrane HPP family protein C.G. S.X.
0.02 2e-3 46 Os04g0443700 AK073841.1 - Conserved hypothetical protein 8e-1 At5g66700 HB53 C.G. S.X.
0.01 1e-4 50 Os01g0876400 AK072910.1 - - 4e-7 At1g71360 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 2e-23 111 Arabidopsis thaliana At2g31955 817754 CNX2 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2) COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2. Encodes a protein involved in molybdenum cofactor biosynthesis. Homologous to E.coli moaA. Expression is abundant in all tissues examined, particularly in roots. Appears to have targeting signals for chloroplast or mitochondria. - - - C.G. S.X.
0.12 4e-13 77 Glycine max GmaAffx.79966.1.S1_at CA800909 - - 8e-31 At2g31955 CNX2 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2) C.G. S.X.
0.09 1e-32 141 Hordeum vulgare Contig22234_at Contig22234 - - 1e+1 At5g07100 WRKY26 C.G. S.X.
0.17 3e-17 91 Populus trichocarpa PtpAffx.205004.1.S1_at pmrna9902 hypothetical protein - 4e-85 At2g31955 CNX2 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2) C.G. S.X.
0.54 0 805 Triticum aestivum Ta.8717.3.S1_at CA640811 - - 3e-21 At2g31955 CNX2 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2) C.G. S.X.
0.01 3e-1 36 Vitis vinifera 1615135_at CD797887 - - 1e+1 At5g41992 CPuORF58 (Conserved peptide upstream open reading frame 58) C.G. S.X.
0.32 5e-130 464 Zea mays Zm.4345.1.A1_at AW091099 hypothetical protein LOC100272516 - 2e-19 At2g31955 CNX2 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006777 The chemical reactions and pathways resulting in the formation of the Mo-molybdopterin cofactor, essential for the catalytic activity of some enzymes. The cofactor consists of a mononuclear molybdenum (Mo) ion coordinated by one or two molybdopterin ligands.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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