CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0257500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.97 99.9 Os02g0257500 9630.m01478 - - 2e-7 At5g53210 SPCH (SPEECHLESS) S.X. H.G.
0.54 71.9 Os07g0471433 9635.m02808 - - 3e+0 At5g16380 unknown protein S.X. H.G.
0.52 69.6 Os02g0695000 9630.m04547 - - 1e+1 At5g47570 unknown protein S.X. H.G.
0.51 68.7 Os12g0548000 9640.m03502 - - 5e-1 At2g20890 PSB29 S.X. H.G.
0.49 64.4 Os06g0212600 9634.m01070 - Xyloglucan fucosyltransferase family protein 3e+0 At3g50250 unknown protein S.X. H.G.
0.46 60.9 Os02g0524500 9630.m03071 - Zn-finger, RING domain containing protein 4e-2 At3g15030 TCP4 (TCP family transcription factor 4) S.X. H.G.
0.44 58.1 Os01g0499500 9630.m00867 - - 2e+0 At1g25425 CLE43 (CLAVATA3/ESR-RELATED 43) S.X. H.G.
0.41 52.4 Os03g0798701 9631.m05746 - - 1e+0 At3g04640 glycine-rich protein S.X. H.G.
0.39 48.3 Os12g0108300 9640.m00075 - - 9e+0 At4g11485 LCR11 (Low-molecular-weight cysteine-rich 11) S.X. H.G.
0.37 45.0 Os07g0108700 NM_186154.1 - - 2e-6 At4g39090 RD19 (RESPONSIVE TO DEHYDRATION 19) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
51.2 99.9 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
45.5 99.9 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
37.6 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
37.5 99.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
35.6 99.8 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
33.4 99.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
29.5 99.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.5 99.3 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.1 99.2 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.3 98.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 2e-8 61 Os02g0759000 AK107898.1 - - 6e-3 At2g46810 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.07 8e-8 59 Os05g0597000 9633.m04897 - - 3e-1 At3g06120 MUTE (MUTE) C.G. S.X.
0.05 9e-11 69 Os08g0483900 AK107626.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 3e-12 At1g72210 basic helix-loop-helix (bHLH) family protein (bHLH096) C.G. S.X.
0.05 8e-8 59 Os02g0691500 AK060695.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 9e-10 At1g72210 basic helix-loop-helix (bHLH) family protein (bHLH096) C.G. S.X.
0.02 2e-5 52 Os08g0467400 AK105607.1 - Zinc transporter ZIP family protein 3e-10 At1g68100 IAR1 (IAA-ALANINE RESISTANT 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 2e-7 57 Arabidopsis thaliana At5g53210 835402 SPCH (SPEECHLESS) Encodes a basic helix-loop-helix (bHLH) transcription factor that is necessary and sufficient for the asymmetric divisions that establish the stomatal lineage in Arabidopsis thaliana. Expression of SPCH in young epidermal cells allows these cells to make asymmetric divisions. SPCH is a substrate of a kinase MPK3 and MPK6. - - - C.G. S.X.
0.03 1e-2 42 Glycine max Gma.561.1.S1_at BQ741052 - - 4e-13 At1g72210 basic helix-loop-helix (bHLH) family protein (bHLH096) C.G. S.X.
0.02 2e-2 40 Hordeum vulgare Contig11889_at Contig11889 - - 2e+0 At5g15890 unknown protein C.G. S.X.
0.11 9e-4 46 Populus trichocarpa PtpAffx.218281.1.S1_at pmrna33835 hypothetical protein - 3e-19 At5g53210 SPCH (SPEECHLESS) C.G. S.X.
0.06 4e-5 50 Triticum aestivum TaAffx.58588.1.S1_at CA618337 - - 4e-3 At1g22490 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.05 2e-1 36 Vitis vinifera 1616185_at CF568785 - - 1e-6 At1g72210 basic helix-loop-helix (bHLH) family protein (bHLH096) C.G. S.X.
0.02 3e-4 46 Zea mays Zm.5776.1.A1_at CO520963 hypothetical protein LOC100273913 - 9e-2 At2g47140 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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