CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0256100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.56 76.3 Os02g0256100 AK059595.1 - Glycoside hydrolase, family 28 protein 1e-24 At4g23820 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein S.X. H.G.
0.67 87.2 Os07g0658600 CK738634 - Radc1 1e-8 At5g07030 aspartic-type endopeptidase S.X. H.G.
0.38 46.9 Os03g0134900 AK102889.1 - Glutathione S-transferase GSTF14 (Fragment) 3e+0 At3g62030 peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4) S.X. H.G.
0.37 45.0 Os03g0239000 AK061284.1 - Glycoside hydrolase, family 16 domain containingprotein 2e-4 At1g32170 XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4) S.X. H.G.
0.27 27.5 Os06g0217900 AK103765.1 - Cyclin, C-terminal domain containing protein 8e-1 At4g14520 DNA-directed RNA polymerase II-related S.X. H.G.
0.17 12.6 Os06g0478600 AK064086.1 - Leucine-rich repeat, plant specific containingprotein 9e-1 At5g01380 transcription factor S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.7 98.9 GSM99860 TCHW P3_m103 control, biological rep3 GSE4438 Expression data from rice under salinity stress
15.7 98.7 GSM99870 TCHW P13_agami control, biological rep1 GSE4438 Expression data from rice under salinity stress
15.3 98.7 GSM99858 TCHW P1_m103 control, biological rep1 GSE4438 Expression data from rice under salinity stress
12.9 98.4 GSM67056 FL478 salt stressed replicate 2 GSE3053 Rice salt expression
11.1 98.2 GSM67060 IR29 salt stressed replicate 1 GSE3053 Rice salt expression
11.0 98.2 GSM99874 TCHW P17_agami salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
10.2 98.0 GSM99868 TCHW P11_ir29 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
10.2 98.0 GSM429983 Rice mutant phoenix (pho) panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
9.4 97.9 GSM99867 TCHW P10_ir29 salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
9.3 97.9 GSM67057 FL478 salt stressed replicate 3 GSE3053 Rice salt expression
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.34 0 1140 Os02g0256000 AK108573.1 - - 5e-2 At3g16850 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.19 1e-38 163 Os01g0618900 AK058453.1 - Glycoside hydrolase, family 28 protein 2e-23 At4g23820 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.14 1e-13 79 Os05g0587000 9633.m04802 - Glycoside hydrolase, family 28 protein 2e-4 At3g62110 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.05 8e-6 54 Os03g0124900 BI804847 - Glycoside hydrolase, family 28 protein 1e-2 At4g33440 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.05 8e-6 54 Os06g0106800 AK122178.1 - Conserved hypothetical protein 2e-1 At3g61490 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.04 2e-12 75 Os11g0658800 AK065526.1 - Glycoside hydrolase, family 28 protein 2e-11 At5g49215 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.03 2e-12 75 Os12g0554800 AK105676.1 - Polygalacturonase-like protein 6e-11 At5g49215 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.02 3e-2 42 Os01g0929600 AK070978.1 - Conserved hypothetical protein 3e-1 At3g14760 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 1e-24 115 Arabidopsis thaliana At4g23820 828482 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA - - - C.G. S.X.
0.12 5e-3 44 Glycine max Gma.7587.1.S1_at CD392205 - - 2e-15 At5g41870 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.16 1e-19 97 Hordeum vulgare Contig12893_at Contig12893 - - 9e-13 At4g23820 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.06 2e-5 52 Populus trichocarpa PtpAffx.5923.1.S1_at CV229264 hypothetical protein - 2e-38 At4g23820 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.12 5e-21 103 Triticum aestivum TaAffx.85286.1.S1_at CA624020 - - 8e-17 At4g23820 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1621724_at CB341760 - - 3e+0 At5g25560 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.58 0 1007 Zea mays Zm.2786.1.S1_at BM078481 - - 3e-4 At5g41870 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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