CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0255400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 68.0 Os02g0255400 NM_196472.1 - RNA-directed DNA polymerase (Reversetranscriptase) domain containing protein 1e-3 At2g39480 PGP6 (P-GLYCOPROTEIN 6) S.X. H.G.
0.80 94.6 Os07g0226700 9635.m01218 - - 1e+0 At3g15750 unknown protein S.X. H.G.
0.80 94.6 Os01g0758800 AU082216 - Conserved hypothetical protein 1e+0 At3g26420 ATRZ-1A S.X. H.G.
0.73 91.1 Os01g0843250 9629.m06177 - - 1e+0 At1g01780 LIM domain-containing protein S.X. H.G.
0.67 87.2 Os05g0558750 9633.m04529 - - 8e+0 At3g19790 unknown protein S.X. H.G.
0.29 31.1 Os05g0287100 9633.m01925 - - 9e+0 At5g27541 S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
57.4 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
26.5 99.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.4 99.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.2 99.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.4 99.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.8 99.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.8 99.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.1 99.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.5 99.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.9 99.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 0 1998 Os04g0330900 AK065565.1 - - 5e-1 At2g39780 RNS2 (RIBONUCLEASE 2) C.G. S.X.
0.13 2e-6 54 Os08g0154700 CF324539 - Small nuclear ribonucleoprotein (Sm protein)family protein 9e-24 At1g03330 small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative C.G. S.X.
0.11 4e-53 208 Os04g0649700 AK059352.1 - Protein kinase domain containing protein 3e-1 At4g18692 unknown protein C.G. S.X.
0.09 2e-9 63 Os06g0141800 AK107277.1 - Conserved hypothetical protein 6e-1 At3g49300 proline-rich family protein C.G. S.X.
0.08 1e-4 48 Os04g0152600 9632.m00599 - - 2e+0 At3g03670 peroxidase, putative C.G. S.X.
0.07 4e-4 46 Os02g0539000 9630.m03189 - - 4e-3 At1g44790 ChaC-like family protein C.G. S.X.
0.06 3e-92 343 Os04g0645700 AK100707.1 - Hypothetical protein 6e-4 At5g03180 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 1e-3 44 Os10g0523000 AK069167.1 - Hypothetical protein 2e-3 At2g20613 unknown protein C.G. S.X.
0.03 6e-3 42 Os12g0582600 AK108157.1 - Hypothetical protein 4e-2 At5g19090 heavy-metal-associated domain-containing protein C.G. S.X.
0.02 2e-5 50 Os07g0231900 AK105271.1 - Peptidase, trypsin-like serine and cysteineproteases domain containing protein 2e-1 At5g42990 UBC18 (ubiquitin-conjugating enzyme 18) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e-3 48 Arabidopsis thaliana At2g39480 818533 PGP6 (P-GLYCOPROTEIN 6) F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:nucleus, plasma membrane;BOMFAPV - - - C.G. S.X.
0.00 1e-1 42 Glycine max GmaAffx.85066.1.S1_at BE805167 - - 1e-22 At4g27600 pfkB-type carbohydrate kinase family protein C.G. S.X.
0.01 2e+0 36 Hordeum vulgare EBro03_SQ007_C24_at EBro03_SQ007_C24 - - 1e+0 At4g15885 kinesin motor protein-related C.G. S.X.
0.01 6e+0 36 Populus trichocarpa PtpAffx.220245.1.S1_at pmrna36607 hypothetical protein - 2e+1 At3g14670 unknown protein C.G. S.X.
0.02 7e-2 42 Triticum aestivum TaAffx.52679.1.S1_at CA680916 - - 2e+0 At1g17430 hydrolase, alpha/beta fold family protein C.G. S.X.
0.01 3e-1 38 Vitis vinifera 1616667_a_at CB343534 similar to ribosomal protein L29 family protein /// hypothetical protein LOC100259766 - 7e-5 At5g65220 ribosomal protein L29 family protein C.G. S.X.
0.01 3e-5 52 Zea mays Zm.2980.1.A1_at AW120459 - - 2e+0 At1g29140 pollen Ole e 1 allergen and extensin family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage