CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0247200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 93.1 Os02g0247200 AK102024.1 - T-complex protein 1, gamma subunit (TCP-1-gamma)(CCT-gamma) (Matricin) 6e-73 At5g26360 chaperonin, putative S.X. H.G.
0.44 58.1 Os03g0622300 AK107931.1 - - 3e-1 At1g79790 haloacid dehalogenase-like hydrolase family protein S.X. H.G.
0.39 48.3 Os08g0266600 AK099812.1 - Cytochrome cd1-nitrite reductase-like, C-terminalhaem d1 domain containing protein 1e-5 At4g30840 WD-40 repeat protein family S.X. H.G.
0.36 44.0 Os04g0320200 AK069513.1 - TPR-like domain containing protein 3e-10 At1g60770 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.35 41.7 Os04g0381000 AK105435.1 - Dynamin-like protein 2e-11 At4g33650 DRP3A (DYNAMIN-RELATED PROTEIN 3A) S.X. H.G.
0.33 38.8 Os03g0794700 AK058881.1 - 40S ribosomal protein S18 8e-40 At1g34030 40S ribosomal protein S18 (RPS18B) S.X. H.G.
0.33 38.8 Os02g0184100 AK073734.1 - Conserved hypothetical protein 2e-3 At3g51880 HMGB1 (HIGH MOBILITY GROUP B 1) S.X. H.G.
0.24 22.4 Os05g0543200 BI810904 - Ran GTPase activating protein 6e-3 At5g26210 AL4 (ALFIN-LIKE 4) S.X. H.G.
0.24 22.4 Os03g0151600 AK073240.1 - GCN5-related N-acetyltransferase domain containingprotein 8e+0 At1g75390 AtbZIP44 (Arabidopsis thaliana basic leucine-zipper 44) S.X. H.G.
0.24 22.4 Os08g0113200 AK102710.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 4e-1 At5g15790 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
22.3 99.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.1 98.2 GSM195224 Suspension cell GSE7951 Genome-wide gene expression profiling of rice stigma
7.4 97.5 GSM159186 SAM, biological rep 1 GSE6893 Expression data for reproductive development in rice
6.9 97.3 GSM275408 Bala root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.3 97.2 GSM275410 Bala root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.0 97.0 GSM159187 SAM, biological rep 2 GSE6893 Expression data for reproductive development in rice
5.8 97.0 GSM159188 SAM, biological rep 3 GSE6893 Expression data for reproductive development in rice
5.7 96.9 GSM275416 Azucena root tip_Before the wax layer_Rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.7 96.9 GSM409428 Nipponbare_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
5.5 96.8 GSM275407 Azucena root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.70 0 1487 Os06g0538000 AK069949.1 - Chaperonin Cpn60/TCP-1 family protein 5e-83 At5g26360 chaperonin, putative C.G. S.X.
0.01 2e+0 36 Os01g0139200 AK099060.1 - Octicosapeptide/Phox/Bem1p domain containingprotein 1e-1 At2g01190 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein C.G. S.X.
0.01 2e+0 36 Os01g0823200 AK066097.1 - Conserved hypothetical protein 8e-11 At1g06890 transporter-related C.G. S.X.
0.01 2e+0 36 Os02g0137800 AK101629.1 - Conserved hypothetical protein 8e-2 At1g33040 NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5) C.G. S.X.
0.01 2e+0 36 Os03g0293900 AK072637.1 - GroEL-like chaperone, ATPase domain containingprotein 5e-2 At2g28000 CPN60A (CHAPERONIN-60ALPHA) C.G. S.X.
0.01 2e+0 36 Os08g0245200 AK069932.1 - 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)(4-coumaroyl-CoA synthase 1) 3e-10 At3g21240 4CL2 (4-COUMARATE:COA LIGASE 2) C.G. S.X.
0.01 2e+0 36 Os09g0108400 AK106506.1 - Conserved hypothetical protein 3e-1 At1g10500 ATCPISCA (chloroplast-localized IscA-like protein) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.59 6e-73 276 Arabidopsis thaliana At5g26360 832705 chaperonin, putative F:unfolded protein binding, protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:unknown;BOMFPAV - - - C.G. S.X.
0.26 2e-30 135 Glycine max Gma.6692.1.S1_at AW309658 - - 4e-101 At5g26360 chaperonin, putative C.G. S.X.
0.51 0 734 Hordeum vulgare Contig9215_at Contig9215 - - 8e-16 At5g26360 chaperonin, putative C.G. S.X.
0.31 1e-44 182 Populus trichocarpa PtpAffx.7885.2.S1_at BI138978 hypothetical protein - 1e-103 At5g26360 chaperonin, putative C.G. S.X.
0.62 0 1168 Triticum aestivum Ta.2554.1.S1_x_at CK210349 - - 1e-46 At5g26360 chaperonin, putative C.G. S.X.
0.23 3e-44 178 Vitis vinifera 1610292_at CB345949 hypothetical protein LOC100255417 - 3e-50 At5g26360 chaperonin, putative C.G. S.X.
0.64 0 1005 Zea mays Zm.16810.1.A1_at CF053948 T-complex protein 1 subunit gamma - 3e-32 At5g26360 chaperonin, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006457 The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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