CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0220400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.44 58.1 Os02g0220400 AK099607.1 - AG-motif binding protein-4 1e-8 At4g26150 CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1) S.X. H.G.
0.40 51.1 Os02g0647900 AK060824.1 - Aldehyde dehydrogenase domain containing protein 3e-1 At5g48690 - S.X. H.G.
0.36 44.0 Os08g0547500 AK065731.1 - Kinesin-like polypeptides 4 (Fragment) 5e-10 At3g51150 kinesin motor family protein S.X. H.G.
0.33 38.8 Os08g0445000 AK106866.1 - Zn-finger, RING domain containing protein 1e-3 At5g57750 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.30 32.7 Os03g0850700 AK062083.1 - Phosphatidylinositol phosphatidylcholine transferprotein sec14 cytosolic-like protein 4e-2 At1g01630 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative S.X. H.G.
0.28 31.1 Os03g0701500 AK063166.1 - GNS1/SUR4 membrane protein family protein 2e+0 At3g06470 GNS1/SUR4 membrane family protein S.X. H.G.
0.18 13.7 Os03g0294800 AK066380.1 - Protein kinase domain containing protein 4e-3 At2g40270 protein kinase family protein S.X. H.G.
0.04 2.0 Os05g0110300 AK067116.1 - Conserved hypothetical protein 3e-15 At5g02240 binding / catalytic/ coenzyme binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
35.9 99.8 GSM281585 Rice Zhonghua11, biological rep3 GSE11175 Comparison of transcriptome profile between wild-type and dst mutant plants
27.5 99.6 GSM281588 Rice mutant dst, biological rep3 GSE11175 Comparison of transcriptome profile between wild-type and dst mutant plants
26.6 99.5 GSM281584 Rice Zhonghua11, biological rep2 GSE11175 Comparison of transcriptome profile between wild-type and dst mutant plants
14.8 98.6 GSM281586 Rice mutant dst, biological rep1 GSE11175 Comparison of transcriptome profile between wild-type and dst mutant plants
12.6 98.4 GSM281587 Rice mutant dst, biological rep2 GSE11175 Comparison of transcriptome profile between wild-type and dst mutant plants
7.7 97.6 GSM67060 IR29 salt stressed replicate 1 GSE3053 Rice salt expression
7.2 97.4 GSM281583 Rice Zhonghua11, biological rep1 GSE11175 Comparison of transcriptome profile between wild-type and dst mutant plants
6.9 97.3 GSM174888 C mock 3 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
5.9 97.0 GSM67062 IR29 salt stressed replicate 3 GSE3053 Rice salt expression
5.8 97.0 GSM67056 FL478 salt stressed replicate 2 GSE3053 Rice salt expression
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 5e-37 157 Os06g0571800 AK069851.1 - Zn-finger, GATA type domain containing protein 9e-10 At4g26150 CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1) C.G. S.X.
0.03 2e-2 42 Os07g0198825 9638.m03477 - - 6e-2 At4g13720 inosine triphosphate pyrophosphatase, putative / HAM1 family protein C.G. S.X.
0.02 2e-2 42 Os01g0217100 AK099424.1 - Conserved hypothetical protein 1e-1 At1g16640 transcriptional factor B3 family protein C.G. S.X.
0.02 2e-2 42 Os10g0347500 9638.m01715 - - 4e+0 At2g16900 - C.G. S.X.
0.01 5e-3 44 Os12g0285600 AK069104.1 - Oxysterol-binding protein family protein 3e-26 At1g13170 ORP1D (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1D) C.G. S.X.
0.01 2e-2 42 Os03g0178300 AK121217.1 - Alpha/beta hydrolase family protein 7e-1 At5g49210 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 1e-8 61 Arabidopsis thaliana At4g26150 828721 CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1) F:transcription factor activity;P:response to cytokinin stimulus;C:nucleus;FPOM - - - C.G. S.X.
0.02 9e-1 36 Glycine max GmaAffx.76494.3.A1_at BE659970 - - 2e-16 At1g24260 SEP3 (SEPALLATA3) C.G. S.X.
0.02 3e-1 36 Hordeum vulgare Contig1162_at Contig1162 - - 4e-13 At1g07790 HTB1 C.G. S.X.
0.07 1e-3 46 Populus trichocarpa PtpAffx.10597.1.A1_at CV280317 hypothetical protein - 6e-1 At4g26150 CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1) C.G. S.X.
0.22 6e-26 119 Triticum aestivum TaAffx.84518.1.S1_at CA635012 - - 1e+0 At5g07950 unknown protein C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1613577_at CB975267 - - 3e-1 At1g07980 NF-YC10 (NUCLEAR FACTOR Y, SUBUNIT C10) C.G. S.X.
0.02 3e-1 36 Zea mays Zm.5938.2.A1_a_at AI665871 - - 8e-1 At4g08390 SAPX (STROMAL ASCORBATE PEROXIDASE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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