CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0205500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.64 83.4 Os02g0205500 AK067907.1 - Naringenin-chalcone synthase family protein 7e-5 At5g43760 KCS20 (3-KETOACYL-COA SYNTHASE 20) S.X. H.G.
0.93 99.2 Os02g0126400 AF194413.1 - Protein kinase CPK1 6e-30 At2g17890 CPK16 S.X. H.G.
0.88 96.8 Os10g0580900 AK072734.1 - Conserved hypothetical protein 5e-8 At4g25030 unknown protein S.X. H.G.
0.63 82.7 Os02g0437200 AK065640.1 - SNAP-34 1e+0 At1g68760 ATNUDX1 (ARABIDOPSIS THALIANA NUDIX HYDROLASE 1) S.X. H.G.
0.50 68.0 Os03g0285800 AF332873.1 - MAP kinase 1 (MAP kinase MAPK5a) 8e-4 At2g43790 ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) S.X. H.G.
0.50 68.0 Os03g0241300 AK072703.1 - Hypothetical protein 1e+0 At3g49010 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) S.X. H.G.
0.46 60.9 Os03g0402800 AK061842.1 - ZIM domain containing protein 2e+0 At1g19180 JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1) S.X. H.G.
0.44 58.1 Os01g0908700 AK120427.1 - Heterogeneous nuclear ribonucleoprotein A2 homolog1 (hnRNP A2(A)) 2e-17 At1g67800 copine-related S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.2 98.4 GSM375765 gid1-3_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
11.7 98.2 GSM154945 Leaf_DMSO-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
11.3 98.2 GSM154947 Leaf_DMSO-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
10.4 98.1 GSM154946 Leaf_DMSO-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
10.1 98.0 GSM278844 WuYun3-RSV infected, biological rep1 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
10.1 98.0 GSM278846 WuYun3-RSV infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
9.7 98.0 GSM375767 gid1-3_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
9.3 97.9 GSM159182 Mature leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
9.0 97.8 GSM375766 gid1-3_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
9.0 97.8 GSM154953 Leaf_DMSO-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.58 0 908 Os06g0598800 AK101377.1 - Fatty acid elongase 1-like protein 1e-28 At5g43760 KCS20 (3-KETOACYL-COA SYNTHASE 20) C.G. S.X.
0.52 0 761 Os05g0574600 AK070754.1 - Fatty acid elongase 1-like protein 3e-13 At5g43760 KCS20 (3-KETOACYL-COA SYNTHASE 20) C.G. S.X.
0.40 1e-56 222 Os03g0162800 AK064127.1 - Beta-ketoacyl-CoA-synthase 3e-3 At5g43760 KCS20 (3-KETOACYL-COA SYNTHASE 20) C.G. S.X.
0.38 1e-100 369 Os11g0591200 AK120567.1 - Beta-ketoacyl-CoA-synthase 1e-6 At5g43760 KCS20 (3-KETOACYL-COA SYNTHASE 20) C.G. S.X.
0.25 3e-42 174 Os03g0245700 AK119222.1 - Senescence-associated protein 15 8e-14 At5g43760 KCS20 (3-KETOACYL-COA SYNTHASE 20) C.G. S.X.
0.25 2e-34 149 Os10g0416200 AK073016.1 - Naringenin-chalcone synthase family protein 1e-3 At2g26640 KCS11 (3-KETOACYL-COA SYNTHASE 11) C.G. S.X.
0.19 6e-47 190 Os03g0181500 AK119228.1 - Beta-ketoacyl-CoA synthase 7e-5 At2g26250 KCS10 (3-KETOACYL-COA SYNTHASE 10) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 7e-5 50 Arabidopsis thaliana At5g43760 834398 KCS20 (3-KETOACYL-COA SYNTHASE 20) Encodes KCS20, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). - - - C.G. S.X.
0.13 6e-12 73 Glycine max GmaAffx.73570.1.S1_at BG316320 - - 4e-22 At1g01120 KCS1 (3-KETOACYL-COA SYNTHASE 1) C.G. S.X.
0.56 2e-114 412 Hordeum vulgare Contig5663_at Contig5663 - - 7e-11 At5g43760 KCS20 (3-KETOACYL-COA SYNTHASE 20) C.G. S.X.
0.07 2e-6 56 Populus trichocarpa PtpAffx.55242.1.S1_at CV236376 beta-ketoacyl-coa synthase family protein - 8e-17 At2g26250 KCS10 (3-KETOACYL-COA SYNTHASE 10) C.G. S.X.
0.58 0 640 Triticum aestivum Ta.7498.2.A1_a_at CA593590 - - 6e-11 At5g43760 KCS20 (3-KETOACYL-COA SYNTHASE 20) C.G. S.X.
0.06 1e-3 44 Vitis vinifera 1614378_at CB004761 - - 4e-1 At4g39200 40S ribosomal protein S25 (RPS25E) C.G. S.X.
0.60 0 829 Zea mays Zm.295.1.A1_at AI065608 fae2 protein - 2e-20 At2g26640 KCS11 (3-KETOACYL-COA SYNTHASE 11) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0009058 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage