CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0183000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 79.7 Os02g0183000 9630.m00818 - Zinc-binding protein 2e-5 At2g12646 - S.X. H.G.
0.77 93.1 Os03g0144500 AK122034.1 - The start codon is not identified. 1e-2 At2g20370 MUR3 (MURUS 3) S.X. H.G.
0.61 81.2 Os06g0634000 AK073652.1 - Hypothetical protein 2e+0 At2g41050 PQ-loop repeat family protein / transmembrane family protein S.X. H.G.
0.55 73.7 Os01g0936900 AK073591.1 - Peptidase aspartic family protein 1e+1 At5g64667 IDL2 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 2) S.X. H.G.
0.55 73.7 Os02g0614300 AK112070.1 - ANT (Ovule development protein aintegumenta) 5e-20 At1g51190 PLT2 (PLETHORA 2) S.X. H.G.
0.44 58.1 Os06g0211600 AK073279.1 - Xyloglucan fucosyltransferase family protein 4e-6 At1g14070 FUT7 S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
28.3 99.6 GSM275416 Azucena root tip_Before the wax layer_Rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
22.1 99.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.9 99.0 GSM275410 Bala root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
18.3 98.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM275407 Azucena root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
14.1 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM275412 Azucena root tip Buckled at the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 9e-3 42 Os02g0172800 AK103838.1 - Zinc-binding protein 8e-4 At4g13160 unknown protein C.G. S.X.
0.04 1e-4 48 Os06g0666100 AK111793.1 - Protein of unknown function DUF597 family protein 2e-1 At2g12646 - C.G. S.X.
0.02 5e-1 36 Os04g0548000 AK104979.1 - Eukaryotic protein of unknown function DUF862family protein 1e-2 At2g25190 unknown protein C.G. S.X.
0.01 5e-1 36 Os01g0848200 CB633945 - Delta 1-pyrroline-5-carboxylate synthetase (P5CS)[Includes: Glutamate 5-kinase (EC 2.7.2.11)(Gamma-glutamyl kinase) (GK) 4e+0 At5g60805 - C.G. S.X.
0.01 5e-1 36 Os01g0848300 AK120668.1 - TPR-like domain containing protein 2e-6 At1g71420 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 2e-5 50 Arabidopsis thaliana At2g12646 3768403 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.31 4e-4 46 Glycine max Gma.6494.1.S1_at BI784551 - - 3e-41 At2g12646 - C.G. S.X.
0.03 1e-1 36 Hordeum vulgare Contig11763_s_at Contig11763 - - 7e-2 At4g09270 unknown protein C.G. S.X.
0.14 6e-6 52 Populus trichocarpa PtpAffx.214507.1.S1_x_at pmrna28213 hypothetical protein - 4e-47 At2g12646 - C.G. S.X.
0.38 9e-57 220 Triticum aestivum TaAffx.29350.1.S1_s_at CA644693 - - 3e-4 At2g12646 - C.G. S.X.
0.03 3e-1 34 Vitis vinifera 1620991_at CB344999 hypothetical LOC100241030 - 0 Atmg00730 - C.G. S.X.
0.03 1e-1 36 Zea mays Zm.5166.1.S1_at AI612220 - - 1e+0 At2g19690 PLA2-BETA (PHOSPHOLIPASE A2-BETA) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage