CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0180500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.39 48.3 Os02g0180500 AK101220.1 - Chorismate mutase CM2 (EC 5.4.99.5) (Chorimatemutase) 2e-1 At2g36410 unknown protein S.X. H.G.
0.60 79.7 Os03g0439800 D15919 - Conserved hypothetical protein 3e+0 At2g03955 - S.X. H.G.
0.19 15.1 Os01g0889000 CA763093 - TPR-like domain containing protein 1e-3 At1g67680 7S RNA binding S.X. H.G.
0.17 12.6 Os02g0600100 AK071215.1 - Proteasome component region PCI domain containingprotein 7e-35 At4g24820 26S proteasome regulatory subunit, putative (RPN7) S.X. H.G.
0.07 3.7 Os10g0483900 NM_197061.1 - Conserved hypothetical protein 2e+0 At3g55880 unknown protein S.X. H.G.
0.03 1.4 Os07g0412400 AK102184.1 - Adenylate kinase family protein 2e-3 At5g60340 maoC-like dehydratase domain-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.7 97.3 GSM275410 Bala root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.3 97.2 GSM275409 Bala root tip_At the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.9 97.0 GSM409434 9311_young panicle 2cm, biological rep5 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
5.6 96.9 GSM275408 Bala root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.5 96.8 GSM149410 Rice Azucena 1ppm Arsenate Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
5.4 96.8 GSM159187 SAM, biological rep 2 GSE6893 Expression data for reproductive development in rice
5.4 96.8 GSM100441 Rice Azucena 1ppm Arsenate Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
5.2 96.7 GSM149412 Rice Bala 1ppm Arsenate Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
5.2 96.7 GSM99881 TCHW P23_ir29 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
5.0 96.6 GSM275413 Azucena root tip_Buckled at the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 3e-60 234 Os02g0158200 9630.m00564 - - 4e-1 At3g44380 - C.G. S.X.
0.13 8e-67 256 Os07g0485500 AK121068.1 - Protein of unknown function DUF6 domain containingprotein 7e-1 At4g19270 unknown protein C.G. S.X.
0.12 1e-59 232 Os06g0561100 CB622963 - - 8e-1 At3g44380 - C.G. S.X.
0.10 9e-73 276 Os03g0701400 AK120400.1 - Conserved hypothetical protein 1e+0 At5g47220 ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2) C.G. S.X.
0.09 5e-68 260 Os11g0472000 AK112047.1 - - 4e-13 At3g02830 ZFN1 (ZINC FINGER PROTEIN 1) C.G. S.X.
0.07 1e-68 262 Os02g0144300 AK106692.1 - Conserved hypothetical protein 2e+0 At4g36650 ATPBRP (PLANT-SPECIFIC TFIIB-RELATED PROTEIN) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 38 Arabidopsis thaliana At2g36410 818215 unknown protein F:unknown;P:unknown;C:plasma membrane;MOBPFAV - - - C.G. S.X.
0.02 3e-1 38 Glycine max GmaAffx.71875.1.S1_s_at BE583850 - - 3e+0 At5g55507 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.52 1e-167 589 Hordeum vulgare Contig17185_at Contig17185 - - 1e-1 At5g10870 ATCM2 (chorismate mutase 2) C.G. S.X.
0.04 1e+0 36 Populus trichocarpa PtpAffx.988.1.A1_at CV257819 chorismate mutase - 3e-11 At5g10870 ATCM2 (chorismate mutase 2) C.G. S.X.
0.51 3e-173 609 Triticum aestivum Ta.25573.1.S1_at BT009499.1 - - 1e-1 At5g10870 ATCM2 (chorismate mutase 2) C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1611805_a_at CF405901 hypothetical protein LOC100252228 - 1e+0 At3g60060 - C.G. S.X.
0.34 6e-86 317 Zea mays Zm.10652.1.S1_at CN844569 hypothetical protein LOC100191856 - 4e-2 At1g23040 hydroxyproline-rich glycoprotein family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0009073 The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan).
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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