CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0176700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 82.7 Os02g0176700 9630.m00757 - Potential calcium-transporting ATPase 9, plasmamembrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 9) 4e-47 At3g21180 ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9) S.X. H.G.
0.44 58.1 Os12g0641100 AK100537.1 - Sodium/hydrogen exchanger family protein 8e-2 At1g14660 ATNHX8 S.X. H.G.
0.44 58.1 Os07g0409900 AF194414.2 - Protein kinase domain containing protein 6e-33 At2g17890 CPK16 S.X. H.G.
0.44 58.1 Os07g0511000 AK070461.1 - Conserved hypothetical protein 2e-2 At5g55060 unknown protein S.X. H.G.
0.20 16.5 Os10g0524400 AK108768.1 - Phospholipase D (EC 3.1.4.4) 2e-19 At4g11840 PLDGAMMA3 S.X. H.G.
0.19 15.1 Os11g0264200 AK100855.1 - Cyclin-like F-box domain containing protein 2e-2 At4g34470 ASK12 (ARABIDOPSIS SKP1-LIKE 12) S.X. H.G.
0.17 12.6 Os06g0712400 AK067573.1 - Protein of unknown function DUF544 family protein 9e-8 At4g11860 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.8 98.4 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.5 97.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM100444 Rice Bala 0ppm Arsenate (Control) Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
6.3 97.2 GSM359916 IR63731 root, salt-treated, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
6.2 97.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.0 97.0 GSM149411 Rice Bala 0ppm Arsenate (Control) Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
5.7 96.9 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.6 96.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 2e-23 113 Os04g0605500 AK120057.1 - Calcium-transporting ATPase 8, plasmamembrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 8) 3e-30 At3g21180 ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9) C.G. S.X.
0.16 2e-26 123 Os08g0517200 AK058787.1 - Potential calcium-transporting ATPase 9, plasmamembrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 9) 1e-39 At4g29900 ACA10 (AUTOINHIBITED CA(2+)-ATPASE 10) C.G. S.X.
0.06 8e-7 57 Os12g0586600 AK100436.1 - Plasma membrane Ca2+-ATPase 2e-59 At2g22950 calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7) C.G. S.X.
0.05 2e-7 59 Os03g0616400 AK071938.1 - Plasma membrane Ca2+-ATPase 4e-26 At2g22950 calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7) C.G. S.X.
0.03 3e-6 56 Os11g0140400 9640.m00336 - Calcium-translocating P-type ATPase, PMCA-typefamily protein 2e-24 At3g57330 ACA11 (autoinhibited Ca2+-ATPase 11) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 4e-47 190 Arabidopsis thaliana At3g21180 821671 ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9) one of the type IIB calcium pump isoforms. encodes an autoinhibited Ca(2+)-ATPase that contains an N-terminal calmodulin binding autoinhibitory domain. - - - C.G. S.X.
0.15 2e-53 212 Glycine max Gma.541.1.S1_at AW156279 - - 5e-70 At5g57110 ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8) C.G. S.X.
0.54 0 1078 Hordeum vulgare Contig25293_at Contig25293 - - 5e-52 At3g21180 ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9) C.G. S.X.
0.19 6e-53 210 Populus trichocarpa PtpAffx.209467.1.S1_at pmrna18776 autoinhibited calcium ATPase - 6e-136 At3g21180 ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9) C.G. S.X.
0.20 2e-27 125 Triticum aestivum Ta.9178.1.S1_at CD452861 - - 7e-17 At4g29900 ACA10 (AUTOINHIBITED CA(2+)-ATPASE 10) C.G. S.X.
0.15 7e-37 155 Vitis vinifera 1614028_at CB976052 hypothetical protein LOC100259808 - 1e-55 At5g57110 ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8) C.G. S.X.
0.34 0 860 Zea mays Zm.17277.1.S1_at CF273093 - - 1e-45 At5g57110 ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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