CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0166600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.42 53.9 Os02g0166600 AK069371.1 - Conserved hypothetical protein 5e-2 At5g39540 - S.X. H.G.
0.67 87.2 Os11g0703400 AB117996.1 - Snf7 family protein 2e-19 At2g06530 VPS2.1 S.X. H.G.
0.63 82.7 Os04g0503600 AK068552.1 - Protein kinase domain containing protein 2e+0 At5g58940 CRCK1 (CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 1) S.X. H.G.
0.47 62.3 Os02g0173800 AK069063.1 - Eukaryotic protein of unknown function DUF284family protein 2e-8 At1g16360 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein S.X. H.G.
0.47 62.3 Os04g0451900 9632.m03567 - Protein phosphatase 2C-like domain containingprotein 6e-11 At1g22280 protein phosphatase 2C, putative / PP2C, putative S.X. H.G.
0.32 36.3 Os03g0639600 AK111569.1 - Zinc-finger protein Lsd1 4e-5 At4g20380 zinc finger protein (LSD1) S.X. H.G.
0.22 19.4 Os03g0567600 AK100305.1 - Protein of unknown function DUF563 family protein 1e-3 At5g58000 - S.X. H.G.
0.21 17.9 Os06g0102700 AK071080.1 - Arm repeat-containing protein 1e-6 At3g46510 PUB13 (PLANT U-BOX 13) S.X. H.G.
0.15 10.3 Os11g0113300 BX898462 - Conserved hypothetical protein 5e-1 At4g20470 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.2 97.4 GSM154831 Root_DMSO-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
6.6 97.3 GSM154829 Root_DMSO-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
6.2 97.1 GSM154832 Root_DMSO-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
4.5 96.3 GSM154939 Root_DMSO-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
4.4 96.2 GSM262005 IAC165, 4 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
4.2 96.0 GSM261999 IAC165, 2 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
4.2 96.0 GSM431927 Root- -Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
4.1 96.0 GSM359912 IR29 root, salt-treated, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
4.0 95.9 GSM154943 Root_tZ-treatment_120min_replicate 2 GSE6719 Cytokinin responsive genes in rice
4.0 95.9 GSM262021 Nipponbare, 11 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-3 44 Os03g0319200 9631.m02018 - - 6e-1 At2g45630 oxidoreductase family protein C.G. S.X.
0.02 6e-3 44 Os05g0171900 AK119584.1 - Glyoxalase/bleomycin resistanceprotein/dioxygenase domain containing protein 6e-20 At1g80160 lactoylglutathione lyase family protein / glyoxalase I family protein C.G. S.X.
0.02 6e-3 44 Os08g0554400 AK101181.1 - Zn-finger, C2H2 type domain containing protein 4e-25 At1g14580 zinc finger (C2H2 type) family protein C.G. S.X.
0.01 6e-3 44 Os05g0172000 AK067512.1 - Hypothetical protein 2e-19 At1g80160 lactoylglutathione lyase family protein / glyoxalase I family protein C.G. S.X.
0.01 6e-3 44 Os08g0115800 AK109860.1 - NAM-like protein 1e-21 At2g46770 EMB2301 (EMBRYO DEFECTIVE 2301) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-2 40 Arabidopsis thaliana At5g39540 833950 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.02 4e+0 34 Glycine max PsAffx.psZS002xO09f_at PsAffx.psZS002xO09f - - 2e+0 At5g02750 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 2e-2 40 Hordeum vulgare Contig19225_at Contig19225 - - 4e+0 At2g07820 unknown protein C.G. S.X.
0.02 1e+0 36 Populus trichocarpa PtpAffx.209904.1.S1_at pmrna19518 hypothetical protein - 2e+0 At3g05936 unknown protein C.G. S.X.
0.03 2e-1 38 Triticum aestivum Ta.6932.2.S1_s_at CD492027 - - 2e-17 At4g30810 scpl29 (serine carboxypeptidase-like 29) C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1620986_at CF372684 - - 2e-2 At2g31957 LCR75 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 75) C.G. S.X.
0.02 3e-1 36 Zea mays Zm.14013.1.A1_a_at BM075523 hypothetical protein LOC100193147 /// hypothetical protein LOC100275870 /// hypothetical protein LOC100276632 /// hypothetical protein LOC100278726 - 2e+1 At5g51860 MADS-box protein (AGL72) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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