Gene omics information

Query gene ID	Os02g0158300
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	89.6	Os02g0158300	AU162361	-	KpsF/GutQ family protein	5e-13	At3g54690	sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os03g0294800	AK066380.1	-	Protein kinase domain containing protein	4e-3	At2g40270	protein kinase family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os08g0445000	AK106866.1	-	Zn-finger, RING domain containing protein	1e-3	At5g57750	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.36	44.0	Os01g0857600	CB965854	-	Conserved hypothetical protein	8e-2	At4g17480	palmitoyl protein thioesterase family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.33	38.8	Os04g0590900	AK066752.1	-	RING/C3HC4/PHD zinc finger-like protein	4e-6	At3g03550	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.31	34.5	Os12g0126000	AK067521.1	-	Multi antimicrobial extrusion protein MatE familyprotein	6e-5	At1g33110	MATE efflux family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.9	97.6	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3	97.5	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.2	97.1	GSM421726	MOCK, 96 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
6.0	97.0	GSM99870	TCHW P13_agami control, biological rep1	GSE4438	Expression data from rice under salinity stress
5.1	96.6	GSM421703	XOO, 96 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
5.0	96.6	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.7	96.4	GSM159271	Rice coleoptiles, 4 days old, anoxic, REPLICATE 1 (Sample #11)	GSE6908	Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
4.7	96.4	GSM99879	TCHW P21_ir29 control, biological rep3	GSE4438	Expression data from rice under salinity stress
4.4	96.2	GSM99871	TCHW P14_agami control, biological rep2	GSE4438	Expression data from rice under salinity stress
4.4	96.2	GSM99858	TCHW P1_m103 control, biological rep1	GSE4438	Expression data from rice under salinity stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e-15	83	Os02g0158400	AK104768.1	-	contains InterPro domain(s): IPR009044	2e-3	At1g71260	ATWHY2 (A. THALIANA WHIRLY 2)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	2e-1	38	Os01g0935100	NM_190049.1	-	-	2e-5	At5g47640	NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	6e-2	40	Os09g0110400	AK068844.1	-	DNA-directed RNA polymerase II 36 kDa polypeptideA (EC 2.7.7.6) (RNA polymerase II subunit 3)	2e-17	At2g15430	NRPB3	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	2e-1	38	Os11g0242600	9639.m01281	-	Uncharacterized plant-specific domain 01627containing protein	2e+0	At5g42070	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	6e-2	40	Os05g0313700	AK107553.1	-	Hypothetical protein	3e-1	At2g11910	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	6e-2	40	Os09g0413600	AK107000.1	-	Rho GTPase activation protein domain containingprotein	1e+0	At1g30260	-	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	2e-1	38	Os04g0622600	AB002266.1	-	XA1	3e+0	At5g13470	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	5e-13	75	Arabidopsis thaliana	At3g54690	824634	sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein	F:isomerase activity, sugar binding;P:carbohydrate metabolic process;C:unknown;BOAFPMV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.14	3e-12	73	Glycine max	Gma.13192.1.S1_at	CD392405	-	-	2e-23	At3g54690	sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein	C.G.	S.X.	Please select
0.02	2e-1	36	Hordeum vulgare	Contig17932_at	Contig17932	-	-	7e+0	At5g66290	unknown protein	C.G.	S.X.	Please select
0.17	2e-13	77	Populus trichocarpa	PtpAffx.24320.1.A1_a_at	CV282924	hypothetical protein	-	3e-52	At3g54690	sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e-1	38	Triticum aestivum	TaAffx.49272.2.S1_at	CA717189	-	-	9e-1	At2g03830	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1621348_at	CF405396	-	-	3e-1	At2g36070	ATTIM44-2	C.G.	S.X.	Please select
0.44	9e-81	299	Zea mays	Zm.13323.1.S1_at	BQ294442	-	-	2e-8	At3g54690	sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
L	GO:0005975	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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