CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0133900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.6 Os02g0133900 AK107180.1 - Eukaryotic protein of unknown function DUF829family protein 7e-1 At4g24240 WRKY7 S.X. H.G.
0.91 98.9 Os04g0557800 AB021079.1 - Ra 5e+0 At5g41315 GL3 (GLABROUS 3) S.X. H.G.
0.83 95.8 Os03g0108500 AK108704.1 - Sterol desaturase family protein 2e-4 At4g22756 SMO1-2 (STEROL C4-METHYL OXIDASE 1-2) S.X. H.G.
0.80 94.6 Os03g0259400 9631.m01481 - Leucoanthocyanidin reductase (EC 1.17.1.3)(Leucocyanidin reductase) 5e-1 At4g24700 unknown protein S.X. H.G.
0.77 93.1 Os04g0182300 9632.m00908 - Peptidase S8 and S53, subtilisin, kexin, sedolisindomain containing protein 5e+0 At1g01900 SBTI1.1 S.X. H.G.
0.67 87.2 Os02g0103100 AK071040.1 - Conserved hypothetical protein 3e-1 At5g62500 ATEB1B (END BINDING PROTEIN 1B) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
97.8 100.0 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
93.7 100.0 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
88.7 100.0 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
8.8 97.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.8 97.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-4 48 Os08g0266600 AK099812.1 - Cytochrome cd1-nitrite reductase-like, C-terminalhaem d1 domain containing protein 1e-5 At4g30840 WD-40 repeat protein family C.G. S.X.
0.02 5e-3 44 Os01g0112100 AK100946.1 - - 2e+0 At3g13235 ubiquitin family protein C.G. S.X.
0.02 2e-2 42 Os05g0220900 AK109172.1 - Conserved hypothetical protein 5e-2 At1g07135 glycine-rich protein C.G. S.X.
0.01 1e-3 46 Os05g0586400 AK068482.1 - Conserved hypothetical protein 2e+0 At3g11930 universal stress protein (USP) family protein C.G. S.X.
0.01 2e-2 42 Os01g0268300 AK102391.1 - DNA gyrase subunit B 2e-64 At5g04130 DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase II, putative / DNA gyrase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 7e-1 36 Arabidopsis thaliana At4g24240 828525 WRKY7 Encodes a Ca-dependent calmodulin binding protein. Sequence similarity to the WRKY transcription factor gene family. - - - C.G. S.X.
0.02 9e-1 36 Glycine max Gma.15543.1.S1_s_at L22030.1 hydroxyproline-rich glycoprotein - 5e-4 At2g43150 proline-rich extensin-like family protein C.G. S.X.
0.02 2e-2 40 Hordeum vulgare Contig8118_at Contig8118 - - 1e+0 At1g70640 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein C.G. S.X.
0.06 2e-1 38 Populus trichocarpa Ptp.2944.1.A1_at CV253718 hypothetical protein - 4e-14 At2g18245 unknown protein C.G. S.X.
0.40 5e-85 315 Triticum aestivum TaAffx.12464.1.S1_at BJ261413 - - 2e-3 At4g19512 unknown protein C.G. S.X.
0.03 8e-1 34 Vitis vinifera 1619942_at CF568925 - - 3e+0 At3g57370 transcription factor IIB (TFIIB) family protein C.G. S.X.
0.53 5e-157 553 Zea mays Zm.4321.1.S1_at AI855098 hypothetical protein LOC100191344 - 2e-1 At3g51600 LTP5 (Lipid transfer protein 5) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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