CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0129800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.82 95.0 Os02g0129800 AK109213.1 - Conserved hypothetical protein 3e-1 At1g58150 unknown protein S.X. H.G.
0.21 17.9 Os02g0562700 AB110167.1 - Gamma hydroxybutyrate dehydrogenase (EC 1.1.1.61) 7e-10 At3g25530 GLYR1 (GLYOXYLATE REDUCTASE 1) S.X. H.G.
0.21 17.9 Os12g0529900 AK059455.1 - Hypothetical protein 2e+0 At4g35820 oxidoreductase, 2OG-Fe(II) oxygenase family protein S.X. H.G.
0.18 13.7 Os03g0191100 AK070661.1 - Mitochondrial substrate carrier family protein 3e-4 At5g64970 mitochondrial substrate carrier family protein S.X. H.G.
0.17 12.6 Os05g0574400 AK073698.1 - Malate dehydrogenase 6e-35 At3g15020 malate dehydrogenase (NAD), mitochondrial, putative S.X. H.G.
0.14 9.3 Os03g0426800 AK099511.1 - Ubiquitin domain containing protein 4e-4 At1g77870 MUB5 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 5 PRECURSOR) S.X. H.G.
0.13 8.2 Os06g0133800 AK105053.1 - The start codon is not identified. 1e-49 At2g45290 transketolase, putative S.X. H.G.
0.09 4.9 Os03g0283100 AK065887.1 - Glutathione S-transferase, C-terminal domaincontaining protein 4e-5 At3g55040 GSTL2 S.X. H.G.
0.08 4.2 Os07g0509800 AU100738 - PAPS-reductase-like protein precursor 1e+0 At4g04610 APR1 (APS REDUCTASE 1) S.X. H.G.
0.08 4.2 Os05g0182100 AK071095.1 - TPR-like domain containing protein 5e-5 At4g39470 chloroplast lumen common family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
20.0 99.1 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.5 98.8 GSM431940 Shoot- -Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
14.6 98.6 GSM100446 Rice Bala 1ppm Arsenate Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
14.4 98.6 GSM409428 Nipponbare_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
13.2 98.4 GSM174889 H FR13 4 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
13.1 98.4 GSM409422 Nipponbare_young panicle 2cm, biological rep2 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
13.0 98.4 GSM431939 Shoot- -Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
12.5 98.3 GSM267999 Green leaves in F9G RILs from parents lines GSE10872 Molecular characterization and genetic analysis reveal SA0420 as an early senescing rice mutant with pleotropic
12.4 98.3 GSM174886 F FR13 4 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
12.0 98.3 GSM174887 D FR13 3 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 9e-3 42 Os03g0676100 9631.m04592 - Protein of unknown function DUF589 family protein 2e+0 At1g78890 unknown protein C.G. S.X.
0.03 9e-3 42 Os11g0554200 AK106479.1 - Hypothetical protein 2e-1 At2g28790 osmotin-like protein, putative C.G. S.X.
0.03 4e-2 40 Os01g0240600 NM_188710.1 - - 7e-1 At5g47700 60S acidic ribosomal protein P1 (RPP1C) C.G. S.X.
0.02 9e-3 42 Os04g0385600 9632.m03008 - Cyclin-like F-box domain containing protein 6e-1 At3g11820 SYP121 (SYNTAXIN OF PLANTS 121) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 3e-1 36 Arabidopsis thaliana At1g58150 842182 unknown protein F:molecular_function unknown;P:in 9 processes;C:cellular_component unknown;P - - - C.G. S.X.
0.04 6e-3 42 Glycine max Gma.907.2.S1_at AW186064 - - 3e-3 At5g49560 unknown protein C.G. S.X.
0.13 9e-6 50 Hordeum vulgare Contig21281_at Contig21281 - - 3e-1 At3g49570 LSU3 (RESPONSE TO LOW SULFUR 3) C.G. S.X.
0.04 3e-2 40 Populus trichocarpa PtpAffx.207591.1.S1_x_at pmrna15065 hypothetical protein - 6e-2 At4g13850 GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2) C.G. S.X.
0.16 8e-8 57 Triticum aestivum Ta.13134.1.A1_at BQ170823 - - 2e-1 At3g49570 LSU3 (RESPONSE TO LOW SULFUR 3) C.G. S.X.
0.04 5e+0 30 Vitis vinifera 1621176_at CF202746.1 similar to HSC70-1 (heat shock cognate 70 kDa protein 1); ATP binding - 1e+0 At5g44572 unknown protein C.G. S.X.
0.07 1e-1 36 Zea mays Zm.2258.1.A1_at AY112615.1 - - 1e+0 At3g49570 LSU3 (RESPONSE TO LOW SULFUR 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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