CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0128800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.6 Os02g0128800 AK119901.1 - Seven in absentia protein family protein 3e-15 At4g27880 seven in absentia (SINA) family protein S.X. H.G.
0.44 58.1 Os01g0898400 CR282750 - Hypothetical protein 1e+0 At5g45090 AtPP2-A7 (Phloem protein 2-A7) S.X. H.G.
0.42 53.9 Os03g0157300 AK103362.1 - Uncharacterized Cys-rich domain containing protein 6e-12 At4g35920 MCA1 (mid1-complementing activity 1) S.X. H.G.
0.33 38.8 Os06g0318300 AK060873.1 - Rho GDP-dissociation inhibitor 1 (Rho GDI-1)(AtRhoGDI1) 2e-7 At1g12070 Rho GDP-dissociation inhibitor family protein S.X. H.G.
0.29 31.1 Os02g0720200 AK121803.1 - 65kD microtubule associated protein 3e-1 At4g26760 MAP65-2 S.X. H.G.
0.16 11.3 Os10g0563300 AK122086.1 - WD40-like domain containing protein 1e-46 At5g07590 WD-40 repeat protein family S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.5 98.2 GSM302914 emb6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
11.4 98.2 GSM302915 emb6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
7.5 97.5 GSM409429 Nipponbare_young panicle 2cm, biological rep5 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
6.6 97.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.6 97.3 GSM409421 Nipponbare_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
6.5 97.2 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.0 97.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.9 97.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.7 96.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.5 96.8 GSM159187 SAM, biological rep 2 GSE6893 Expression data for reproductive development in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 4e-41 171 Os07g0659800 AK107155.1 - Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven inabsentia homolog 5). Splice isoform 2 5e-8 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.23 2e-30 135 Os01g0234900 NM_188653.1 - Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven inabsentia homolog 5). Splice isoform 2 1e-38 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.16 2e-27 125 Os02g0293400 AK072985.1 - Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven inabsentia homolog 5). Splice isoform 2 6e-45 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.16 2e-27 125 Os05g0238200 9633.m01306 - Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven inabsentia homolog 5) 6e-20 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.02 6e-3 44 Os07g0414200 AK067835.1 - SAM (and some other nucleotide) binding motifdomain containing protein 8e-4 At1g54650 methyltransferase C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.26 3e-15 83 Arabidopsis thaliana At4g27880 828901 seven in absentia (SINA) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:mitochondrion, nucleus;MPOF - - - C.G. S.X.
0.13 3e-10 67 Glycine max Gma.5088.2.S1_at CA937805 - - 4e-36 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.58 0 890 Hordeum vulgare Contig10787_at Contig10787 - - 5e-5 At4g27880 seven in absentia (SINA) family protein C.G. S.X.
0.11 7e-5 50 Populus trichocarpa PtpAffx.283.6.S1_a_at CV229539 hypothetical protein - 8e-47 At4g27880 seven in absentia (SINA) family protein C.G. S.X.
0.57 0 821 Triticum aestivum Ta.1796.1.S1_at AJ611102 - - 4e-12 At4g27880 seven in absentia (SINA) family protein C.G. S.X.
0.20 2e-26 119 Vitis vinifera 1609250_at Y18471.1 SINA1p - 2e-60 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.46 4e-161 567 Zea mays Zm.733.1.S1_at AY108731.1 SINA2 - 2e-7 At2g41980 seven in absentia (SINA) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006511 The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein.
L GO:0007275 The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
L GO:0016567 The process by which one or more ubiquitin moieties are added to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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