Gene omics information

Query gene ID	Os02g0126700
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	58.1	Os02g0126700	AK063621.1	-	Small nuclear ribonucleoprotein E (snRNP-E) (Smprotein E) (Sm-E) (SmE)	2e-11	At2g18740	small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.83	95.8	Os08g0137200	AK065561.1	-	Actin/actin-like family protein	3e-10	At1g18450	ATARP4	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.73	91.1	Os11g0244800	AK103215.1	-	Alfin-1	3e-15	At1g14510	AL7 (ALFIN-LIKE 7)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os01g0837500	AK105439.1	-	RuvB-like 1 (EC 3.6.1.-) (49-kDa TATA box-bindingprotein-interacting protein) (49 kDa TBP-interactingprotein) (TIP49a) (Pontin 52) (Nuclear matrix protein238) (NMP 238) (54 kDa erythrocyte cytosolic protein)(ECP-54) (TIP60-associated protein 54-alpha)(TAP54-alpha)	4e-58	At5g22330	RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.61	81.2	Os02g0208200	AK067315.1	-	Hypothetical protein	5e-1	At1g33850	40S ribosomal protein S15, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.27	27.5	Os03g0858100	AK100745.1	-	CRM1 protein (Fragment)	6e-47	At5g17020	XPO1A	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.1	97.4	GSM409432	9311_young panicle 2cm, biological rep3	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
7.1	97.4	GSM409434	9311_young panicle 2cm, biological rep5	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
6.9	97.3	GSM409430	9311_young panicle 2cm, biological rep1	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
6.4	97.2	GSM409431	9311_young panicle 2cm, biological rep2	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
6.1	97.1	GSM409422	Nipponbare_young panicle 2cm, biological rep2	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
5.6	96.9	GSM409421	Nipponbare_young panicle 2cm, biological rep1	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
5.5	96.8	GSM409429	Nipponbare_young panicle 2cm, biological rep5	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
5.5	96.8	GSM159186	SAM, biological rep 1	GSE6893	Expression data for reproductive development in rice
5.4	96.8	GSM159187	SAM, biological rep 2	GSE6893	Expression data for reproductive development in rice
5.4	96.8	GSM409427	Nipponbare_young panicle 2cm, biological rep3	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	2e-65	250	Os08g0151400	AK059440.1	-	-	4e-10	At4g30330	small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	4e-2	40	Os06g0556300	AK063985.1	-	Cyclin-like F-box domain containing protein	4e+0	At3g23620	brix domain-containing protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	2e-1	38	Os03g0183300	AK058349.1	-	Pathogenesis-related transcriptional factor andERF domain containing protein	4e+0	At5g46873	-	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	2e-1	38	Os05g0519800	AK069435.1	-	Protein of unknown function DUF28 family protein	6e-1	At2g25830	YebC-related	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.42	2e-11	69	Arabidopsis thaliana	At2g18740	816389	small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative	F:molecular_function unknown;P:biological_process unknown;C:small nucleolar ribonucleoprotein complex, nucleus;MFOAP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	4e-17	89	Glycine max	Gma.2459.1.S1_at	CD409102	-	-	2e-52	At2g18740	small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative	C.G.	S.X.	Please select
0.33	1e-51	202	Hordeum vulgare	Contig5116_at	Contig5116	-	-	6e-15	At2g18740	small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative	C.G.	S.X.	Please select
0.34	2e-16	87	Populus trichocarpa	Ptp.4071.2.S1_s_at	CV232545	hypothetical protein	-	8e-51	At4g30330	small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.36	3e-88	325	Triticum aestivum	Ta.4956.1.A1_at	BJ274299	-	-	2e-2	At2g18740	small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative	C.G.	S.X.	Please select
0.29	2e-18	91	Vitis vinifera	1615955_s_at	CA817833	similar to small nuclear ribonucleoprotein E	-	8e-45	At2g18740	small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative	C.G.	S.X.	Please select
0.31	7e-56	216	Zea mays	Zm.6883.1.S1_at	CN844698	small nuclear ribonucleoprotein E	-	2e-2	At4g30330	small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
L	GO:0006397	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
L	GO:0008380	The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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