Gene omics information

Query gene ID	Os02g0122500
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.9	Os02g0122500	BQ908554	-	Conserved hypothetical protein	9e-1	At1g55546	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.43	55.4	Os04g0445200	AK062427.1	-	Predicted enzyme of the cupin superfamily	1e+0	At5g42635	glycine-rich protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.36	44.0	Os10g0573000	AK072743.1	-	Carbohydrate kinase-like protein	7e-17	At4g27600	pfkB-type carbohydrate kinase family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.32	36.3	Os07g0176900	AK060861.1	-	Ribose-5-phosphate isomerase precursor (EC5.3.1.6)	4e-5	At2g01290	ribose-5-phosphate isomerase	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.22	19.4	Os09g0249900	AK099860.1	-	Ferredoxin-thioredoxin reductase (Fragment)	2e-18	At2g04700	ferredoxin thioredoxin reductase catalytic beta chain family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.21	17.9	Os01g0633000	AK062051.1	-	Ribosomal protein L31 family protein	4e-1	At4g03590	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.2	97.4	GSM174888	C mock 3 dpi rep 2 with array type rice from Affymetrix	GSE7256	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
6.6	97.3	GSM278844	WuYun3-RSV infected, biological rep1	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
5.8	97.0	GSM207565	Mudanjiang8 wild type control rep1	GSE8380	Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
5.6	96.9	GSM278845	WuYun3-RSV infected, biological rep2	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
5.4	96.8	GSM207567	Mudanjiang8 wild type control rep3	GSE8380	Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
5.3	96.7	GSM421682	XOC, 24 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
5.3	96.7	GSM421726	MOCK, 96 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
5.2	96.7	GSM421706	XOO, 96 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
5.1	96.6	GSM421702	XOO, 24 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
5.1	96.6	GSM421686	XOC, 96 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	7e-2	40	Os08g0162700	AK062732.1	-	Conserved hypothetical protein	4e-1	At5g01880	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	1e-1	38	Os07g0244600	9635.m01398	-	Hypothetical protein	2e-3	At2g04190	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	2e-2	42	Os01g0874300	AK060684.1	-	MybHv5 (Fragment)	7e-31	At4g38620	MYB4	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	2e-2	42	Os07g0658100	NM_185986.1	-	Conserved hypothetical protein	2e-3	At2g47115	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	3e-2	40	Os11g0644500	9639.m03915	-	Transferase family protein	3e+0	At1g28450	AGL58 (AGAMOUS-LIKE 58)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	1e-1	38	Os03g0393900	AK069809.1	-	Patatin-like protein 1	5e-2	At5g43590	patatin, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	7e-2	40	Os02g0256000	AK108573.1	-	-	5e-2	At3g16850	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	4e-1	36	Os10g0579200	AK102009.1	-	Sugar transporter family protein	7e-11	At5g17010	sugar transporter family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	2e+0	34	Os01g0924300	AK100821.1	-	WD40-like domain containing protein	6e-5	At4g18900	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	9e-1	34	Arabidopsis thaliana	At1g55546	6241390	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e+0	32	Glycine max	PsAffx.CL1991Contig1_s_at	PsAffx.CL1991Contig1	-	-	4e+0	At4g28410	aminotransferase-related	C.G.	S.X.	Please select
0.26	5e-13	73	Hordeum vulgare	Contig14891_at	Contig14891	-	-	5e-9	At3g61870	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	34	Populus trichocarpa	PtpAffx.156310.3.S1_at	DN493017	hypothetical protein /// tir-nbs resistance protein /// hypothetical protein	-	3e-1	At4g09750	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.30	1e-15	83	Triticum aestivum	Ta.17050.1.S1_a_at	CA721584	-	-	9e-7	At3g61870	unknown protein	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1609655_at	CB979026	-	-	3e+0	At2g37435	cysteine-type endopeptidase inhibitor	C.G.	S.X.	Please select
0.04	6e+0	30	Zea mays	ZmAffx.987.1.A1_at	AI834689	-	-	8e-1	At1g55546	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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