CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0121700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.70 88.4 Os02g0121700 AK110925.1 - Terpene synthase-like domain containing protein 2e-2 At1g61680 TPS14 (TERPENE SYNTHASE 14) S.X. H.G.
0.31 34.5 Os05g0540900 AK072284.1 - - 4e-2 At1g04445 zinc finger (C2H2 type) family protein S.X. H.G.
0.31 34.5 Os02g0733900 AK111335.1 - Conserved hypothetical protein 5e+0 At5g20181 unknown protein S.X. H.G.
0.30 32.7 Os01g0597600 AU056799 - Amino acid/polyamine transporter II family protein 5e+0 At2g35480 unknown protein S.X. H.G.
0.27 27.5 Os08g0509100 AK066825.1 - Lipoxygenase, chloroplast precursor (EC1.13.11.12) 6e+0 At4g14723 - S.X. H.G.
0.26 25.6 Os08g0232700 AK100248.1 - Exo70 exocyst complex subunit family protein 2e-2 At5g41430 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.25 24.1 Os02g0460200 AK060911.1 - Conserved hypothetical protein 2e-3 At4g31380 FLP1 (FPF1-LIKE PROTEIN 1) S.X. H.G.
0.23 21.2 Os02g0527200 AK058851.1 - Conserved hypothetical protein 5e-1 At1g07950 surfeit locus protein 5 family protein / SURF5 family protein S.X. H.G.
0.23 21.2 Os02g0677300 AK106041.1 - CRT/DRE binding factor 1 4e-2 At1g15360 SHN1 (SHINE 1) S.X. H.G.
0.22 19.4 Os06g0666400 AK108002.1 - VQ domain containing protein 6e+0 At4g15120 VQ motif-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
67.9 99.9 GSM159181 Mature leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
47.1 99.9 GSM159182 Mature leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
27.5 99.6 GSM375769 gid2-1_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
26.7 99.6 GSM154958 Leaf_control_replicate 2 GSE6720 Gene expression in OsRR6-overexpression line
24.1 99.4 GSM154957 Leaf_control_replicate 1 GSE6720 Gene expression in OsRR6-overexpression line
21.7 99.2 GSM375770 gid2-1_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
17.8 98.9 GSM278855 KT95-418-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
15.5 98.7 GSM375772 gid2-1_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
13.3 98.4 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.9 98.3 GSM174889 H FR13 4 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.66 0 1017 Os10g0489500 NM_197111.1 - Terpene synthase-like domain containing protein 4e+0 At4g33140 unknown protein C.G. S.X.
0.01 3e-2 42 Os01g0596100 AK107398.1 - Cyclin-like F-box domain containing protein 2e-1 At4g22280 F-box family protein C.G. S.X.
0.01 3e-2 42 Os07g0113500 9635.m00134 - TPR-like domain containing protein 1e-2 At3g08820 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.01 3e-2 42 Os07g0129700 AF050181.1 - OSH15 protein (Homeobox gene) 3e-19 At4g08150 KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA) C.G. S.X.
0.01 3e-2 42 Os09g0500200 AK071129.1 - Conserved hypothetical protein 5e-1 At4g26965 NADH:ubiquinone oxidoreductase family protein C.G. S.X.
0.01 3e-2 42 Os10g0148400 CB679458 - TGF-beta receptor, type I/II extracellular regionfamily protein 2e-1 At5g03710 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-2 42 Arabidopsis thaliana At1g61680 842465 TPS14 (TERPENE SYNTHASE 14) F:S-linalool synthase activity;P:monoterpene biosynthetic process;C:plastid;PO - - - C.G. S.X.
0.02 1e-1 40 Glycine max PsAffx.C154000043_at PsAffx.C154000043 - - 2e+0 At1g78370 ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20) C.G. S.X.
0.37 4e-51 202 Hordeum vulgare Contig11021_at Contig11021 - - 3e+0 At4g22700 LBD32 (LOB DOMAIN-CONTAINING PROTEIN 32) C.G. S.X.
0.02 2e+0 36 Populus trichocarpa PtpAffx.221353.1.S1_at pmrna38200 hypothetical protein - 6e-2 At3g51325 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.06 5e-9 63 Triticum aestivum TaAffx.109854.1.S1_at CA667998 - - 4e+0 At4g29850 unknown protein C.G. S.X.
0.01 5e+0 32 Vitis vinifera 1620072_s_at CF605495 similar to Os01g0238200 - 5e+0 At5g52870 unknown protein C.G. S.X.
0.01 1e-1 38 Zea mays Zm.2569.1.A1_at CF635472 agmatine coumaroyltransferase - 7e+0 At4g27900 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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