CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0121300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os02g0121300 L29470.1 - Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)(PPIase) (Rotamase) (Cyclophilin) (Cyclosporin A-bindingprotein) 9e-12 At4g38740 ROC1 (ROTAMASE CYP 1) S.X. H.G.
0.61 81.2 Os08g0366100 AK120339.1 - EDF-1 protein (HMBF1alpha) (Endothelialdifferentiation-related factor 1, isoform alpha)(Fragment) 6e-11 At2g42680 MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A) S.X. H.G.
0.61 81.2 Os08g0126300 AK105038.1 - Glyceraldehyde-3-phosphate dehydrogenase(Fragment) 6e-23 At1g13440 GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) S.X. H.G.
0.60 79.7 Os11g0425600 AK121882.1 - Four F5 protein family protein 5e+0 At5g42040 RPN12b (Regulatory Particle Non-ATPase 12b) S.X. H.G.
0.59 78.0 Os03g0670700 AK119242.1 - Glycine-rich RNA-binding protein GRP1A 2e-6 At4g39260 GR-RBP8 S.X. H.G.
0.38 46.9 Os03g0177500 D63583.1 - EF-1 alpha 0 At1g07920 elongation factor 1-alpha / EF-1-alpha S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.0 94.6 GSM262008 IAC165, 11 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
2.8 94.3 GSM240994 Zhonghua11 7 DAF, biological replicate 1 GSE9498 Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
2.2 92.7 GSM262009 IAC165, 11 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
2.2 92.7 GSM275411 Azucena root tip_Buckled at the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
2.1 92.4 GSM262021 Nipponbare, 11 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
2.1 92.4 GSM240995 Zhonghua11 7 DAF, biological replicate 2 GSE9498 Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
2.0 92.0 GSM262017 Nipponbare, 4 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
2.0 92.0 GSM240996 Zhonghua11 7 DAF, biological replicate 3 GSE9498 Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
1.9 91.6 GSM240997 gif1 7 DAF, biological replicate 1 GSE9498 Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
1.9 91.6 GSM255762 wt collar chip GSE12097 antiOsLIC collar chip
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 8e-26 119 Os09g0571400 AK103109.1 - Cyclophilin 1 3e-5 At4g38740 ROC1 (ROTAMASE CYP 1) C.G. S.X.
0.04 3e-16 87 Os02g0761100 AK070404.1 - Cyclophilin-40 (Expressed protein) 2e-29 At2g15790 SQN (SQUINT) C.G. S.X.
0.02 4e-2 38 Os01g0754500 AK106976.1 - Protein of unknown function DUF1421 family protein 8e-2 At4g28300 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.01 2e-1 36 Os03g0810600 AK101920.1 - Ras small GTPase, Ras type family protein 3e-23 At5g27540 MIRO1 (Miro-related GTP-ase 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 9e-12 71 Arabidopsis thaliana At4g38740 830029 ROC1 (ROTAMASE CYP 1) Encodes cytosolic cyclophilin ROC1. - - - C.G. S.X.
0.39 4e-73 276 Glycine max PsAffx.CL74Contig1_at PsAffx.CL74Contig1 - - 4e-16 At4g38740 ROC1 (ROTAMASE CYP 1) C.G. S.X.
0.32 2e-41 169 Hordeum vulgare Contig8383_s_at Contig8383 - - 3e-2 At4g38740 ROC1 (ROTAMASE CYP 1) C.G. S.X.
0.16 4e-2 40 Populus trichocarpa PtpAffx.249.78.S1_x_at CV275944 hypothetical protein - 7e-44 At4g38740 ROC1 (ROTAMASE CYP 1) C.G. S.X.
0.46 2e-114 412 Triticum aestivum Ta.1078.2.S1_a_at BJ252383 Cyclophilin - 8e-6 At4g38740 ROC1 (ROTAMASE CYP 1) C.G. S.X.
0.22 7e-22 103 Vitis vinifera 1617047_at BQ792281 hypothetical protein LOC100267506 - 6e-22 At4g38740 ROC1 (ROTAMASE CYP 1) C.G. S.X.
0.42 1e-113 408 Zea mays Zm.889.1.A1_s_at M55021.1 - - 2e-12 At4g38740 ROC1 (ROTAMASE CYP 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006457 The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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