CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0108500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.95 99.6 Os02g0108500 AK063089.1 - Hypothetical protein 5e-1 At4g23420 short-chain dehydrogenase/reductase (SDR) family protein S.X. H.G.
0.56 76.3 Os02g0793200 AK101158.1 - TPR-like domain containing protein 1e+0 At2g45350 CRR4 (CHLORORESPIRATORY REDUCTION 4) S.X. H.G.
0.52 69.6 Os09g0327200 9637.m01313 - PCMP-H2 protein (Fragment) 3e-4 At4g02750 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.48 63.7 Os05g0427600 9633.m03284 - - 1e+0 At1g02440 ATARFD1A (ADP-ribosylation factor D1A) S.X. H.G.
0.44 58.1 Os05g0164600 9633.m00646 - - 9e-1 At2g28440 proline-rich family protein S.X. H.G.
0.43 55.4 Os03g0828000 9631.m06038 - - 1e-1 At2g36160 40S ribosomal protein S14 (RPS14A) S.X. H.G.
0.43 55.4 Os02g0594400 9630.m03657 - - 8e-2 At4g34120 LEJ1 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1) S.X. H.G.
0.43 55.4 Os08g0385300 9636.m02941 - - 3e+0 At1g12660 - S.X. H.G.
0.42 53.9 Os04g0254300 AK120624.1 - Conserved hypothetical protein 3e+0 At4g00060 MEE44 (maternal effect embryo arrest 44) S.X. H.G.
0.41 52.4 Os11g0445500 9639.m02311 - - 9e+0 At5g57290 60S acidic ribosomal protein P3 (RPP3B) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
37.5 99.8 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
36.1 99.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
33.3 99.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
30.9 99.7 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
29.9 99.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.1 99.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.5 99.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.3 99.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.2 99.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.2 99.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 2e-128 460 Os02g0107600 AK067983.1 - Conserved hypothetical protein 3e-2 At1g70895 CLE17 (CLAVATA3/ESR-RELATED 17) C.G. S.X.
0.09 9e-35 149 Os04g0331900 AK071460.1 - Hypothetical protein 6e-1 At3g51880 HMGB1 (HIGH MOBILITY GROUP B 1) C.G. S.X.
0.07 4e-31 137 Os12g0250800 CF318760 - Hypothetical protein 4e+0 At5g04390 zinc finger (C2H2 type) family protein C.G. S.X.
0.07 5e-24 113 Os04g0280800 AK064967.1 - Conserved hypothetical protein 2e+0 At1g31270 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-1 36 Arabidopsis thaliana At4g23420 828441 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA - - - C.G. S.X.
0.02 2e-1 38 Glycine max HgAffx.8310.1.S1_at CB380191 - - 1e+0 At1g17090 unknown protein C.G. S.X.
0.03 2e-1 36 Hordeum vulgare HVSMEm0008B04r2_s_at HVSMEm0008B04r2 UDP-D-glucose epimerase 1 - 5e-9 At4g23920 UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2) C.G. S.X.
0.02 3e+0 34 Populus trichocarpa PtpAffx.116185.1.S1_at CK112500 - - 1e+0 At4g17640 CKB2 C.G. S.X.
0.03 5e-1 36 Triticum aestivum TaAffx.82982.1.S1_at CA663944 - - 3e+0 At4g16140 proline-rich family protein C.G. S.X.
0.04 2e+0 32 Vitis vinifera 1615668_at CB001519 - - 3e-1 At2g43018 CPuORF17 (Conserved peptide upstream open reading frame 17) C.G. S.X.
0.02 8e-1 34 Zea mays Zm.8783.1.A1_at BM332025 6b-interacting protein 1 - 1e+0 At5g47220 ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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