CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0102700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.47 62.3 Os02g0102700 AK061193.1 - Small nuclear ribonucleoprotein Sm D3 (snRNP coreprotein D3) (Sm-D3) 8e-9 At1g20580 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative S.X. H.G.
0.83 95.8 Os12g0244200 AK120721.1 - Conserved hypothetical protein 2e+0 At2g14700 unknown protein S.X. H.G.
0.67 87.2 Os01g0616500 AK073157.1 - Ribosomal protein L22/L17 family protein 6e-1 At5g02770 unknown protein S.X. H.G.
0.53 71.3 Os03g0825400 AK059163.1 - Mitochondrial import inner membrane translocasesubunit Tim10 4e-16 At2g29530 mitochondrial import inner membrane translocase (TIM10) S.X. H.G.
0.44 58.1 Os03g0852500 AK068948.1 - Conserved hypothetical protein 1e-1 At4g29240 leucine-rich repeat family protein / extensin family protein S.X. H.G.
0.32 36.3 Os02g0481000 AK066511.1 - Conserved hypothetical protein 3e-2 At2g33510 protein binding S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.1 97.9 GSM302914 emb6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
8.7 97.8 GSM275408 Bala root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
8.0 97.6 GSM302915 emb6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
6.4 97.2 GSM159187 SAM, biological rep 2 GSE6893 Expression data for reproductive development in rice
5.9 97.0 GSM275405 Azucena root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.7 96.9 GSM275411 Azucena root tip_Buckled at the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.2 96.7 GSM159186 SAM, biological rep 1 GSE6893 Expression data for reproductive development in rice
5.2 96.7 GSM302917 endo6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
4.9 96.5 GSM275409 Bala root tip_At the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.7 96.4 GSM159188 SAM, biological rep 3 GSE6893 Expression data for reproductive development in rice
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.40 4e-154 545 Os03g0240800 AK061178.1 - Small nuclear ribonucleoprotein Sm D3 (snRNP coreprotein D3) (Sm-D3) 3e-8 At1g20580 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative C.G. S.X.
0.03 6e-2 40 Os01g0834900 AK063898.1 - Hypothetical protein 4e-1 At3g52390 tatD-related deoxyribonuclease family protein C.G. S.X.
0.03 6e-2 40 Os03g0319000 AK070706.1 - Hypothetical protein 3e-2 At3g11110 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 4e-3 44 Os03g0274000 AK060769.1 - Oxysterol-binding protein family protein 1e-24 At5g02100 UNE18 (UNFERTILIZED EMBRYO SAC 18) C.G. S.X.
0.01 6e-2 40 Os09g0567700 AK065913.1 - TUP1-like enhancer of split domain containingprotein 4e-23 At3g44530 HIRA (Arabidopsis homolog of histone chaperone HIRA) C.G. S.X.
0.01 6e-2 40 Os11g0588400 AK066872.1 - Disease resistance protein family protein 4e-1 At3g50550 unknown protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 8e-9 61 Arabidopsis thaliana At1g20580 838647 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative F:molecular_function unknown;P:unknown;C:nucleolus, small nucleolar ribonucleoprotein complex, nucleus;MFOP - - - C.G. S.X.
0.22 9e-25 115 Glycine max Gma.5905.3.S1_a_at BM567825 - - 7e-43 At1g20580 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative C.G. S.X.
0.40 3e-124 444 Hordeum vulgare Contig1287_at Contig1287 - - 1e-4 At1g20580 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative C.G. S.X.
0.16 3e-15 83 Populus trichocarpa Ptp.4424.1.S1_at DN492993 hypothetical protein - 3e-60 At1g20580 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative C.G. S.X.
0.41 9e-123 440 Triticum aestivum Ta.1111.3.S1_at BJ295064 - - 3e-8 At1g20580 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative C.G. S.X.
0.22 7e-22 103 Vitis vinifera 1610146_at CA813968 hypothetical protein LOC100250427 - 5e-22 At1g20580 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative C.G. S.X.
0.43 2e-149 527 Zea mays Zm.1884.1.S1_at BM381552 small nuclear ribonucleoprotein Sm D3 - 2e-9 At1g76300 SmD3 (snRNP core protein SmD3) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006397 Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
L GO:0008380 The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage